Detecting actively translated open reading frames in ribosome profiling data
Calviello, Lorenzo, Mukherjee, Neelanjan, Wyler, Emanuel, Zauber, Henrik, Hirsekorn, Antje, Selbach, Matthias, Landthaler, Markus, Obermayer, Benedikt, Ohler, Uwe
Published in Nature methods (01.02.2016)
Published in Nature methods (01.02.2016)
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SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis
Wendisch, Daniel, Dietrich, Oliver, Mari, Tommaso, von Stillfried, Saskia, Ibarra, Ignacio L., Mittermaier, Mirja, Mache, Christin, Chua, Robert Lorenz, Knoll, Rainer, Timm, Sara, Brumhard, Sophia, Krammer, Tobias, Zauber, Henrik, Hiller, Anna Luisa, Pascual-Reguant, Anna, Mothes, Ronja, Bülow, Roman David, Schulze, Jessica, Leipold, Alexander M., Djudjaj, Sonja, Erhard, Florian, Geffers, Robert, Pott, Fabian, Kazmierski, Julia, Radke, Josefine, Pergantis, Panagiotis, Baßler, Kevin, Conrad, Claudia, Aschenbrenner, Anna C., Sawitzki, Birgit, Landthaler, Markus, Wyler, Emanuel, Horst, David, Hippenstiel, Stefan, Hocke, Andreas, Heppner, Frank L., Uhrig, Alexander, Garcia, Carmen, Machleidt, Felix, Herold, Susanne, Elezkurtaj, Sefer, Thibeault, Charlotte, Witzenrath, Martin, Cochain, Clément, Suttorp, Norbert, Drosten, Christian, Goffinet, Christine, Kurth, Florian, Schultze, Joachim L., Radbruch, Helena, Ochs, Matthias, Eils, Roland, Müller-Redetzky, Holger, Hauser, Anja E., Luecken, Malte D., Theis, Fabian J., Conrad, Christian, Wolff, Thorsten, Boor, Peter, Selbach, Matthias, Saliba, Antoine-Emmanuel, Sander, Leif Erik
Published in Cell (22.12.2021)
Published in Cell (22.12.2021)
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The Translational Landscape of the Human Heart
van Heesch, Sebastiaan, Witte, Franziska, Schneider-Lunitz, Valentin, Schulz, Jana F., Adami, Eleonora, Faber, Allison B., Kirchner, Marieluise, Maatz, Henrike, Blachut, Susanne, Sandmann, Clara-Louisa, Kanda, Masatoshi, Worth, Catherine L., Schafer, Sebastian, Calviello, Lorenzo, Merriott, Rhys, Patone, Giannino, Hummel, Oliver, Wyler, Emanuel, Obermayer, Benedikt, Mücke, Michael B., Lindberg, Eric L., Trnka, Franziska, Memczak, Sebastian, Schilling, Marcel, Felkin, Leanne E., Barton, Paul J.R., Quaife, Nicholas M., Vanezis, Konstantinos, Diecke, Sebastian, Mukai, Masaya, Mah, Nancy, Oh, Su-Jun, Kurtz, Andreas, Schramm, Christoph, Schwinge, Dorothee, Sebode, Marcial, Harakalova, Magdalena, Asselbergs, Folkert W., Vink, Aryan, de Weger, Roel A., Viswanathan, Sivakumar, Widjaja, Anissa A., Gärtner-Rommel, Anna, Milting, Hendrik, dos Remedios, Cris, Knosalla, Christoph, Mertins, Philipp, Landthaler, Markus, Vingron, Martin, Linke, Wolfgang A., Seidman, Jonathan G., Seidman, Christine E., Rajewsky, Nikolaus, Ohler, Uwe, Cook, Stuart A., Hubner, Norbert
Published in Cell (27.06.2019)
Published in Cell (27.06.2019)
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Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
Ivanov, Andranik, Memczak, Sebastian, Wyler, Emanuel, Torti, Francesca, Porath, Hagit T., Orejuela, Marta R., Piechotta, Michael, Levanon, Erez Y., Landthaler, Markus, Dieterich, Christoph, Rajewsky, Nikolaus
Published in Cell reports (Cambridge) (13.01.2015)
Published in Cell reports (Cambridge) (13.01.2015)
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Journal Article
SARS-CoV-2-mediated dysregulation of metabolism and autophagy uncovers host-targeting antivirals
Gassen, Nils C., Papies, Jan, Bajaj, Thomas, Emanuel, Jackson, Dethloff, Frederik, Chua, Robert Lorenz, Trimpert, Jakob, Heinemann, Nicolas, Niemeyer, Christine, Weege, Friderike, Hönzke, Katja, Aschman, Tom, Heinz, Daniel E., Weckmann, Katja, Ebert, Tim, Zellner, Andreas, Lennarz, Martina, Wyler, Emanuel, Schroeder, Simon, Richter, Anja, Niemeyer, Daniela, Hoffmann, Karen, Meyer, Thomas F., Heppner, Frank L., Corman, Victor M., Landthaler, Markus, Hocke, Andreas C., Morkel, Markus, Osterrieder, Nikolaus, Conrad, Christian, Eils, Roland, Radbruch, Helena, Giavalisco, Patrick, Drosten, Christian, Müller, Marcel A.
Published in Nature communications (21.06.2021)
Published in Nature communications (21.06.2021)
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The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
Baltz, Alexander G., Munschauer, Mathias, Schwanhäusser, Björn, Vasile, Alexandra, Murakawa, Yasuhiro, Schueler, Markus, Youngs, Noah, Penfold-Brown, Duncan, Drew, Kevin, Milek, Miha, Wyler, Emanuel, Bonneau, Richard, Selbach, Matthias, Dieterich, Christoph, Landthaler, Markus
Published in Molecular cell (08.06.2012)
Published in Molecular cell (08.06.2012)
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Spatio-temporal mRNA tracking in the early zebrafish embryo
Holler, Karoline, Neuschulz, Anika, Drewe-Boß, Philipp, Mintcheva, Janita, Spanjaard, Bastiaan, Arsiè, Roberto, Ohler, Uwe, Landthaler, Markus, Junker, Jan Philipp
Published in Nature communications (07.06.2021)
Published in Nature communications (07.06.2021)
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Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program
Wyler, Emanuel, Franke, Vedran, Menegatti, Jennifer, Kocks, Christine, Boltengagen, Anastasiya, Praktiknjo, Samantha, Walch-Rückheim, Barbara, Bosse, Jens, Rajewsky, Nikolaus, Grässer, Friedrich, Akalin, Altuna, Landthaler, Markus
Published in Nature communications (25.10.2019)
Published in Nature communications (25.10.2019)
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Journal Article
Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis
Imami, Koshi, Milek, Miha, Bogdanow, Boris, Yasuda, Tomoharu, Kastelic, Nicolai, Zauber, Henrik, Ishihama, Yasushi, Landthaler, Markus, Selbach, Matthias
Published in Molecular cell (04.10.2018)
Published in Molecular cell (04.10.2018)
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Journal Article
MOV10 Is a 5′ to 3′ RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3′ UTRs
Gregersen, Lea H., Schueler, Markus, Munschauer, Mathias, Mastrobuoni, Guido, Chen, Wei, Kempa, Stefan, Dieterich, Christoph, Landthaler, Markus
Published in Molecular cell (22.05.2014)
Published in Molecular cell (22.05.2014)
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Journal Article
A Variety of Dicer Substrates in Human and C. elegans
Rybak-Wolf, Agnieszka, Jens, Marvin, Murakawa, Yasuhiro, Herzog, Margareta, Landthaler, Markus, Rajewsky, Nikolaus
Published in Cell (20.11.2014)
Published in Cell (20.11.2014)
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Journal Article
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Hafner, Markus, Landthaler, Markus, Burger, Lukas, Khorshid, Mohsen, Hausser, Jean, Berninger, Philipp, Rothballer, Andrea, Ascano, Manuel, Jungkamp, Anna-Carina, Munschauer, Mathias, Ulrich, Alexander, Wardle, Greg S., Dewell, Scott, Zavolan, Mihaela, Tuschl, Thomas
Published in Cell (02.04.2010)
Published in Cell (02.04.2010)
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The human ZC3H3 and RBM26/27 proteins are critical for PAXT-mediated nuclear RNA decay
Silla, Toomas, Schmid, Manfred, Dou, Yuhui, Garland, William, Milek, Miha, Imami, Koshi, Johnsen, Dennis, Polak, Patrik, Andersen, Jens S, Selbach, Matthias, Landthaler, Markus, Jensen, Torben Heick
Published in Nucleic acids research (18.03.2020)
Published in Nucleic acids research (18.03.2020)
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Journal Article
doRiNA: a database of RNA interactions in post-transcriptional regulation
Anders, Gerd, Mackowiak, Sebastian D., Jens, Marvin, Maaskola, Jonas, Kuntzagk, Andreas, Rajewsky, Nikolaus, Landthaler, Markus, Dieterich, Christoph
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins
Zinnall, Ulrike, Milek, Miha, Minia, Igor, Vieira-Vieira, Carlos H., Müller, Simon, Mastrobuoni, Guido, Hazapis, Orsalia-Georgia, Del Giudice, Simone, Schwefel, David, Bley, Nadine, Voigt, Franka, Chao, Jeffrey A., Kempa, Stefan, Hüttelmaier, Stefan, Selbach, Matthias, Landthaler, Markus
Published in Nature communications (18.05.2022)
Published in Nature communications (18.05.2022)
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Journal Article
4EHP and GIGYF1/2 Mediate Translation-Coupled Messenger RNA Decay
Weber, Ramona, Chung, Min-Yi, Keskeny, Csilla, Zinnall, Ulrike, Landthaler, Markus, Valkov, Eugene, Izaurralde, Elisa, Igreja, Cátia
Published in Cell reports (Cambridge) (13.10.2020)
Published in Cell reports (Cambridge) (13.10.2020)
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Journal Article
Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19
Nouailles, Geraldine, Wyler, Emanuel, Pennitz, Peter, Postmus, Dylan, Vladimirova, Daria, Kazmierski, Julia, Pott, Fabian, Dietert, Kristina, Muelleder, Michael, Farztdinov, Vadim, Obermayer, Benedikt, Wienhold, Sandra-Maria, Andreotti, Sandro, Hoefler, Thomas, Sawitzki, Birgit, Drosten, Christian, Sander, Leif E., Suttorp, Norbert, Ralser, Markus, Beule, Dieter, Gruber, Achim D., Goffinet, Christine, Landthaler, Markus, Trimpert, Jakob, Witzenrath, Martin
Published in Nature communications (11.08.2021)
Published in Nature communications (11.08.2021)
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