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Riley, Robert, Salamov, Asaf A., Brown, Daren W., Nagy, Laszlo G., Floudas, Dimitrios, Held, Benjamin W., Levasseur, Anthony, Lombard, Vincent, Morin, Emmanuelle, Otillar, Robert, Lindquist, Erika A., Sun, Hui, LaButti, Kurt M., Schmutz, Jeremy, Jabbour, Dina, Luoi, Hong, Baker, Scott E., Pisabarro, Antonio G., Walton, Jonathan D., Blanchette, Robert A., Henrissat, Bernard, Martin, Francis, Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
Mesny, Fantin, Miyauchi, Shingo, Thiergart, Thorsten, Pickel, Brigitte, Atanasova, Lea, Karlsson, Magnus, Hüttel, Bruno, Barry, Kerrie W., Haridas, Sajeet, Chen, Cindy, Bauer, Diane, Andreopoulos, William, Pangilinan, Jasmyn, LaButti, Kurt, Riley, Robert, Lipzen, Anna, Clum, Alicia, Drula, Elodie, Henrissat, Bernard, Kohler, Annegret, Grigoriev, Igor V., Martin, Francis M., Hacquard, Stéphane
Published in Nature communications (10.12.2021)
Published in Nature communications (10.12.2021)
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
Miyauchi, Shingo, Kiss, Enikő, Kuo, Alan, Drula, Elodie, Kohler, Annegret, Sánchez-García, Marisol, Morin, Emmanuelle, Andreopoulos, Bill, Barry, Kerrie W., Bonito, Gregory, Buée, Marc, Carver, Akiko, Chen, Cindy, Cichocki, Nicolas, Clum, Alicia, Culley, David, Crous, Pedro W., Fauchery, Laure, Girlanda, Mariangela, Hayes, Richard D., Kéri, Zsófia, LaButti, Kurt, Lipzen, Anna, Lombard, Vincent, Magnuson, Jon, Maillard, François, Murat, Claude, Nolan, Matt, Ohm, Robin A., Pangilinan, Jasmyn, Pereira, Maíra de Freitas, Perotto, Silvia, Peter, Martina, Pfister, Stephanie, Riley, Robert, Sitrit, Yaron, Stielow, J. Benjamin, Szöllősi, Gergely, Žifčáková, Lucia, Štursová, Martina, Spatafora, Joseph W., Tedersoo, Leho, Vaario, Lu-Min, Yamada, Akiyoshi, Yan, Mi, Wang, Pengfei, Xu, Jianping, Bruns, Tom, Baldrian, Petr, Vilgalys, Rytas, Dunand, Christophe, Henrissat, Bernard, Grigoriev, Igor V., Hibbett, David, Nagy, László G., Martin, Francis M.
Published in Nature communications (12.10.2020)
Published in Nature communications (12.10.2020)
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
Kohler, Annegret, Kuo, Alan, Nagy, Laszlo G, Morin, Emmanuelle, Barry, Kerrie W, Buscot, Francois, Canbäck, Björn, Choi, Cindy, Cichocki, Nicolas, Clum, Alicia, Colpaert, Jan, Copeland, Alex, Costa, Mauricio D, Doré, Jeanne, Floudas, Dimitrios, Gay, Gilles, Girlanda, Mariangela, Henrissat, Bernard, Herrmann, Sylvie, Hess, Jaqueline, Högberg, Nils, Johansson, Tomas, Khouja, Hassine-Radhouane, LaButti, Kurt, Lahrmann, Urs, Levasseur, Anthony, Lindquist, Erika A, Lipzen, Anna, Marmeisse, Roland, Martino, Elena, Murat, Claude, Ngan, Chew Y, Nehls, Uwe, Plett, Jonathan M, Pringle, Anne, Ohm, Robin A, Perotto, Silvia, Peter, Martina, Riley, Robert, Rineau, Francois, Ruytinx, Joske, Salamov, Asaf, Shah, Firoz, Sun, Hui, Tarkka, Mika, Tritt, Andrew, Veneault-Fourrey, Claire, Zuccaro, Alga, Tunlid, Anders, Grigoriev, Igor V, Hibbett, David S, Martin, Francis
Published in Nature genetics (01.04.2015)
Published in Nature genetics (01.04.2015)
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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
Castanera, Raúl, López-Varas, Leticia, Borgognone, Alessandra, LaButti, Kurt, Lapidus, Alla, Schmutz, Jeremy, Grimwood, Jane, Pérez, Gúmer, Pisabarro, Antonio G, Grigoriev, Igor V, Stajich, Jason E, Ramírez, Lucía
Published in PLoS genetics (13.06.2016)
Published in PLoS genetics (13.06.2016)
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Condon, Bradford J, Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E, Ohm, Robin A, Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinizzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A, Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J, Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E, Ciuffetti, Lynda M, Grigoriev, Igor V, Zhong, Shaobin, Turgeon, B Gillian
Published in PLoS genetics (01.01.2013)
Published in PLoS genetics (01.01.2013)
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Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.
Published in Nature communications (27.02.2020)
Published in Nature communications (27.02.2020)
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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Flundas, Dimitrios, Binder, Manfred, Riley, Robert, Barry, Kerrie, Blanchette, Robert A., Henrissat, Bernard, Martínez, Angel T., Otillar, Robert, Spatafora, Joseph W., Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Górecki, Paweł, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Kersten, Phil, Kohler, Annegret, Kües, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Dueñas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Grigoriev, Igor V., Hibbett, David S.
Published in Science (American Association for the Advancement of Science) (29.06.2012)
Published in Science (American Association for the Advancement of Science) (29.06.2012)
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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
Vesth, Tammi C., Nybo, Jane L., Theobald, Sebastian, Frisvad, Jens C., Larsen, Thomas O., Nielsen, Kristian F., Hoof, Jakob B., Brandl, Julian, Salamov, Asaf, Riley, Robert, Gladden, John M., Phatale, Pallavi, Nielsen, Morten T., Lyhne, Ellen K., Kogle, Martin E., Strasser, Kimchi, McDonnell, Erin, Barry, Kerrie, Clum, Alicia, Chen, Cindy, LaButti, Kurt, Haridas, Sajeet, Nolan, Matt, Sandor, Laura, Kuo, Alan, Lipzen, Anna, Hainaut, Matthieu, Drula, Elodie, Tsang, Adrian, Magnuson, Jon K., Henrissat, Bernard, Wiebenga, Ad, Simmons, Blake A., Mäkelä, Miia R., de Vries, Ronald P., Grigoriev, Igor V., Mortensen, Uffe H., Baker, Scott E., Andersen, Mikael R.
Published in Nature genetics (01.12.2018)
Published in Nature genetics (01.12.2018)
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
Druzhinina, Irina S, Chenthamara, Komal, Zhang, Jian, Atanasova, Lea, Yang, Dongqing, Miao, Youzhi, Rahimi, Mohammad J, Grujic, Marica, Cai, Feng, Pourmehdi, Shadi, Salim, Kamariah Abu, Pretzer, Carina, Kopchinskiy, Alexey G, Henrissat, Bernard, Kuo, Alan, Hundley, Hope, Wang, Mei, Aerts, Andrea, Salamov, Asaf, Lipzen, Anna, LaButti, Kurt, Barry, Kerrie, Grigoriev, Igor V, Shen, Qirong, Kubicek, Christian P
Published in PLoS genetics (09.04.2018)
Published in PLoS genetics (09.04.2018)
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Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum
Peter, Martina, Kohler, Annegret, Ohm, Robin A., Kuo, Alan, Krützmann, Jennifer, Morin, Emmanuelle, Arend, Matthias, Barry, Kerrie W., Binder, Manfred, Choi, Cindy, Clum, Alicia, Copeland, Alex, Grisel, Nadine, Haridas, Sajeet, Kipfer, Tabea, LaButti, Kurt, Lindquist, Erika, Lipzen, Anna, Maire, Renaud, Meier, Barbara, Mihaltcheva, Sirma, Molinier, Virginie, Murat, Claude, Pöggeler, Stefanie, Quandt, C. Alisha, Sperisen, Christoph, Tritt, Andrew, Tisserant, Emilie, Crous, Pedro W., Henrissat, Bernard, Nehls, Uwe, Egli, Simon, Spatafora, Joseph W., Grigoriev, Igor V., Martin, Francis M.
Published in Nature communications (07.09.2016)
Published in Nature communications (07.09.2016)
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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
Lofgren, Lotus A., Nguyen, Nhu H., Vilgalys, Rytas, Ruytinx, Joske, Liao, Hui‐Ling, Branco, Sara, Kuo, Alan, LaButti, Kurt, Lipzen, Anna, Andreopoulos, William, Pangilinan, Jasmyn, Riley, Robert, Hundley, Hope, Na, Hyunsoo, Barry, Kerrie, Grigoriev, Igor V., Stajich, Jason E., Kennedy, Peter G.
Published in The New phytologist (01.04.2021)
Published in The New phytologist (01.04.2021)
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Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria
Lastovetsky, Olga A., Gaspar, Maria L., Mondo, Stephen J., LaButti, Kurt M., Sandor, Laura, Grigoriev, Igor V., Henry, Susan A., Pawlowska, Teresa E.
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
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The Plant Cell Wall—Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Eastwood, Daniel C., Floudas, Dimitrios, Binder, Manfred, Majcherczyk, Andrzej, Schneider, Patrick, Aerts, Andrea, Asiegbu, Fred O., Baker, Scott E., Barry, Kerrie, Bendiksby, Mika, Blumentritt, Melanie, Coutinho, Pedro M., Cullen, Dan, de Vries, Ronald P., Gathman, Allen, Goodell, Barry, Henrissat, Bernard, Ihrmark, Katarina, Kauserud, Hävard, Kohler, Annegret, LaButti, Kurt, Lapidus, Alla, Lavin, José L., Lee, Yong-Hwan, Lindquist, Erika, Lilly, Walt, Lucas, Susan, Morin, Emmanuelle, Murat, Claude, Oguiza, José A., Park, Jongsun, Pisabarro, Antonio G., Riley, Robert, Rosling, Anna, Salamov, Asaf, Schmidt, Olaf, Schmutz, Jeremy, Skrede, Inger, Stenlid, Jan, Wiebenga, Ad, Xie, Xinfeng, Kües, Ursula, Hibbett, David S., Hoffmeister, Dirk, Högberg, Nils, Martin, Francis, Grigoriev, Igor V., Watkinson, Sarah C.
Published in Science (American Association for the Advancement of Science) (05.08.2011)
Published in Science (American Association for the Advancement of Science) (05.08.2011)
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
Chang, Ying, Wang, Sishuo, Sekimoto, Satoshi, Aerts, Andrea L, Choi, Cindy, Clum, Alicia, LaButti, Kurt M, Lindquist, Erika A, Yee Ngan, Chew, Ohm, Robin A, Salamov, Asaf A, Grigoriev, Igor V, Spatafora, Joseph W, Berbee, Mary L
Published in Genome biology and evolution (01.06.2015)
Published in Genome biology and evolution (01.06.2015)
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Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
Miyauchi, Shingo, Hage, Hayat, Drula, Elodie, Lesage-Meessen, Laurence, Berrin, Jean-Guy, Navarro, David, Favel, Anne, Chaduli, Delphine, Grisel, Sacha, Haon, Mireille, Piumi, François, Levasseur, Anthony, Lomascolo, Anne, Ahrendt, Steven, Barry, Kerrie, LaButti, Kurt M, Chevret, Didier, Daum, Chris, Mariette, Jérôme, Klopp, Christophe, Cullen, Daniel, de Vries, Ronald P, Gathman, Allen C, Hainaut, Matthieu, Henrissat, Bernard, Hildén, Kristiina S, Kües, Ursula, Lilly, Walt, Lipzen, Anna, Mäkelä, Miia R, Martinez, Angel T, Morel-Rouhier, Mélanie, Morin, Emmanuelle, Pangilinan, Jasmyn, Ram, Arthur F J, Wösten, Han A B, Ruiz-Dueñas, Francisco J, Riley, Robert, Record, Eric, Grigoriev, Igor V, Rosso, Marie-Noëlle
Published in DNA research (01.04.2020)
Published in DNA research (01.04.2020)
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Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms
Lebreton, Annie, Tang, Nianwu, Kuo, Alan, LaButti, Kurt, Andreopoulos, William, Drula, Elodie, Miyauchi, Shingo, Barry, Kerrie, Clum, Alicia, Lipzen, Anna, Mousain, Daniel, Ng, Vivian, Wang, Ran, Dai, Yucheng, Henrissat, Bernard, Grigoriev, Igor V., Guerin‐Laguette, Alexis, Yu, Fuqiang, Martin, Francis M.
Published in The New phytologist (01.07.2022)
Published in The New phytologist (01.07.2022)
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Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina
Kijpornyongpan, Teeratas, Mondo, Stephen J, Barry, Kerrie, Sandor, Laura, Lee, Juna, Lipzen, Anna, Pangilinan, Jasmyn, LaButti, Kurt, Hainaut, Matthieu, Henrissat, Bernard, Grigoriev, Igor V, Spatafora, Joseph W, Aime, M Catherine
Published in Molecular biology and evolution (01.08.2018)
Published in Molecular biology and evolution (01.08.2018)
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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi
Looney, Brian, Miyauchi, Shingo, Morin, Emmanuelle, Drula, Elodie, Courty, Pierre Emmanuel, Kohler, Annegret, Kuo, Alan, LaButti, Kurt, Pangilinan, Jasmyn, Lipzen, Anna, Riley, Robert, Andreopoulos, William, He, Guifen, Johnson, Jenifer, Nolan, Matt, Tritt, Andrew, Barry, Kerrie W., Grigoriev, Igor V., Nagy, László G., Hibbett, David, Henrissat, Bernard, Matheny, P. Brandon, Labbé, Jesse, Martin, Francis M.
Published in The New phytologist (01.03.2022)
Published in The New phytologist (01.03.2022)
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Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
Wohlbach, Dana J, Kuo, Alan, Sato, Trey K, Potts, Katlyn M, Salamov, Asaf A, LaButti, Kurt M, Sun, Hui, Clum, Alicia, Pangilinan, Jasmyn L, Lindquist, Erika A, Lucas, Susan, Lapidus, Alla, Jin, Mingjie, Gunawan, Christa, Balan, Venkatesh, Dale, Bruce E, Jeffries, Thomas W, Zinkel, Robert, Barry, Kerrie W, Grigoriev, Igor V, Gasch, Audrey P
Published in Proceedings of the National Academy of Sciences - PNAS (09.08.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (09.08.2011)
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