Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer
Nagpal, Kunal, Foote, Davis, Liu, Yun, Chen, Po-Hsuan Cameron, Wulczyn, Ellery, Tan, Fraser, Olson, Niels, Smith, Jenny L., Mohtashamian, Arash, Wren, James H., Corrado, Greg S., MacDonald, Robert, Peng, Lily H., Amin, Mahul B., Evans, Andrew J., Sangoi, Ankur R., Mermel, Craig H., Hipp, Jason D., Stumpe, Martin C.
Published in NPJ digital medicine (07.06.2019)
Published in NPJ digital medicine (07.06.2019)
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Journal Article
Development and Validation of a Deep Learning Algorithm for Gleason Grading of Prostate Cancer From Biopsy Specimens
Nagpal, Kunal, Foote, Davis, Tan, Fraser, Liu, Yun, Chen, Po-Hsuan Cameron, Steiner, David F, Manoj, Naren, Olson, Niels, Smith, Jenny L, Mohtashamian, Arash, Peterson, Brandon, Amin, Mahul B, Evans, Andrew J, Sweet, Joan W, Cheung, Carol, van der Kwast, Theodorus, Sangoi, Ankur R, Zhou, Ming, Allan, Robert, Humphrey, Peter A, Hipp, Jason D, Gadepalli, Krishna, Corrado, Greg S, Peng, Lily H, Stumpe, Martin C, Mermel, Craig H
Published in JAMA oncology (01.09.2020)
Published in JAMA oncology (01.09.2020)
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Journal Article
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
Le, Quy, Hadland, Brandon, Smith, Jenny L, Leonti, Amanda, Huang, Benjamin J, Ries, Rhonda, Hylkema, Tiffany A, Castro, Sommer, Tang, Thao T, McKay, Cyd N, Perkins, LaKeisha, Pardo, Laura, Sarthy, Jay, Beckman, Amy K, Williams, Robin, Idemmili, Rhonda, Furlan, Scott, Ishida, Takashi, Call, Lindsey, Srivastava, Shivani, Loeb, Anisha M, Milano, Filippo, Imren, Suzan, Morris, Shelli M, Pakiam, Fiona, Olson, Jim M, Loken, Michael R, Brodersen, Lisa, Riddell, Stanley R, Tarlock, Katherine, Bernstein, Irwin D, Loeb, Keith R, Meshinchi, Soheil
Published in The Journal of clinical investigation (15.11.2022)
Published in The Journal of clinical investigation (15.11.2022)
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Journal Article
Comprehensive Transcriptome Profiling of Cryptic CBFA2T3-GLIS2 Fusion-Positive AML Defines Novel Therapeutic Options: A COG and TARGET Pediatric AML Study
Smith, Jenny L, Ries, Rhonda E, Hylkema, Tiffany, Alonzo, Todd A, Gerbing, Robert B, Santaguida, Marianne T, Eidenschink Brodersen, Lisa, Pardo, Laura, Cummings, Carrie L, Loeb, Keith R, Le, Quy, Imren, Suzan, Leonti, Amanda R, Gamis, Alan S, Aplenc, Richard, Kolb, E Anders, Farrar, Jason E, Triche, Jr, Timothy J, Nguyen, Cu, Meerzaman, Daoud, Loken, Michael R, Oehler, Vivian G, Bolouri, Hamid, Meshinchi, Soheil
Published in Clinical cancer research (01.02.2020)
Published in Clinical cancer research (01.02.2020)
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Journal Article
A B-cell developmental gene regulatory network is activated in infant AML
Bolouri, Hamid, Ries, Rhonda, Pardo, Laura, Hylkema, Tiffany, Zhou, Wanding, Smith, Jenny L, Leonti, Amanda, Loken, Michael, Farrar, Jason E, Triche, Jr, Timothy J, Meshinchi, Soheil
Published in PloS one (18.11.2021)
Published in PloS one (18.11.2021)
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Integrated stem cell signature and cytomolecular risk determination in pediatric acute myeloid leukemia
Huang, Benjamin J., Smith, Jenny L., Farrar, Jason E., Wang, Yi-Cheng, Umeda, Masayuki, Ries, Rhonda E., Leonti, Amanda R., Crowgey, Erin, Furlan, Scott N., Tarlock, Katherine, Armendariz, Marcos, Liu, Yanling, Shaw, Timothy I., Wei, Lisa, Gerbing, Robert B., Cooper, Todd M., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Rubnitz, Jeffrey, Ma, Jing, Klco, Jeffery M., Ma, Xiaotu, Alonzo, Todd A., Triche, Timothy, Meshinchi, Soheil
Published in Nature communications (19.09.2022)
Published in Nature communications (19.09.2022)
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Inflammatory bone marrow signaling in pediatric acute myeloid leukemia distinguishes patients with poor outcomes
Bolouri, Hamid, Ries, Rhonda E., Wiedeman, Alice E., Hylkema, Tiffany, Scheiding, Sheila, Gersuk, Vivian H., O’Brien, Kimberly, Nguyen, Quynh-Anh, Smith, Jenny L., Alice Long, S., Meshinchi, Soheil
Published in Nature communications (23.11.2022)
Published in Nature communications (23.11.2022)
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Journal Article
Development of siRNA-Loaded Lipid Nanoparticles Targeting Long Non-Coding RNA LINC01257 as a Novel and Safe Therapeutic Approach for t(8;21) Pediatric Acute Myeloid Leukemia
Connerty, Patrick, Moles, Ernest, de Bock, Charles E., Jayatilleke, Nisitha, Smith, Jenny L., Meshinchi, Soheil, Mayoh, Chelsea, Kavallaris, Maria, Lock, Richard B.
Published in Pharmaceutics (14.10.2021)
Published in Pharmaceutics (14.10.2021)
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Journal Article
Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia
Braun, Theodore P., Okhovat, Mariam, Coblentz, Cody, Carratt, Sarah A., Foley, Amy, Schonrock, Zachary, Curtiss, Brittany M., Nevonen, Kimberly, Davis, Brett, Garcia, Brianna, LaTocha, Dorian, Weeder, Benjamin R., Grzadkowski, Michal R., Estabrook, Joey C., Manning, Hannah G., Watanabe-Smith, Kevin, Jeng, Sophia, Smith, Jenny L., Leonti, Amanda R., Ries, Rhonda E., McWeeney, Shannon, Di Genua, Cristina, Drissen, Roy, Nerlov, Claus, Meshinchi, Soheil, Carbone, Lucia, Druker, Brian J., Maxson, Julia E.
Published in Nature communications (29.11.2019)
Published in Nature communications (29.11.2019)
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Journal Article
Etiology of oncogenic fusions in 5,190 childhood cancers and its clinical and therapeutic implication
Liu, Yanling, Klein, Jonathon, Bajpai, Richa, Dong, Li, Tran, Quang, Kolekar, Pandurang, Smith, Jenny L., Ries, Rhonda E., Huang, Benjamin J., Wang, Yi-Cheng, Alonzo, Todd A., Tian, Liqing, Mulder, Heather L., Shaw, Timothy I., Ma, Jing, Walsh, Michael P., Song, Guangchun, Westover, Tamara, Autry, Robert J., Gout, Alexander M., Wheeler, David A., Wan, Shibiao, Wu, Gang, Yang, Jun J., Evans, William E., Loh, Mignon, Easton, John, Zhang, Jinghui, Klco, Jeffery M., Meshinchi, Soheil, Brown, Patrick A., Pruett-Miller, Shondra M., Ma, Xiaotu
Published in Nature communications (05.04.2023)
Published in Nature communications (05.04.2023)
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Journal Article
Author Correction: Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia
Braun, Theodore P., Okhovat, Mariam, Coblentz, Cody, Carratt, Sarah A., Foley, Amy, Schonrock, Zachary, Curtiss, Brittany M., Nevonen, Kimberly, Davis, Brett, Garcia, Brianna, LaTocha, Dorian, Weeder, Benjamin R., Grzadkowski, Michal R., Estabrook, Joey C., Manning, Hannah G., Watanabe-Smith, Kevin, Jeng, Sophia, Smith, Jenny L., Leonti, Amanda R., Ries, Rhonda E., McWeeney, Shannon, Di Genua, Cristina, Drissen, Roy, Nerlov, Claus, Meshinchi, Soheil, Carbone, Lucia, Druker, Brian J., Maxson, Julia E.
Published in Nature communications (16.06.2022)
Published in Nature communications (16.06.2022)
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Journal Article
Texture of Hot-Air-Dried Persimmon (Diospyros kaki) Chips: Instrumental, Sensory, and Consumer Input for Product Development
R. Milczarek, Rebecca, D. Woods, Rachelle, I. LaFond, Sean, L. Smith, Jenny, Sedej, Ivana, W. Olsen, Carl, M. Vilches, Ana, P. Breksa, Andrew, E. Preece, John
Published in Foods (10.10.2020)
Published in Foods (10.10.2020)
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Verification of prognostic expression biomarkers is improved by examining enriched leukemic blasts rather than mononuclear cells from acute myeloid leukemia patients
Pogosova-Agadjanyan, Era L, Hua, Xing, Othus, Megan, Appelbaum, Frederick R, Chauncey, Thomas R, Erba, Harry P, Fitzgibbon, Matthew P, Jenkins, Isaac C, Fang, Min, Lee, Stanley C, Moseley, Anna, Naru, Jasmine, Radich, Jerald P, Smith, Jenny L, Willborg, Brooke E, Willman, Cheryl L, Wu, Feinan, Meshinchi, Soheil, Stirewalt, Derek L
Published in Biomarker research (16.03.2023)
Published in Biomarker research (16.03.2023)
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Journal Article
Artificial Intelligence-Based Breast Cancer Nodal Metastasis Detection: Insights Into the Black Box for Pathologists
Liu, Yun, Kohlberger, Timo, Norouzi, Mohammad, Dahl, George E, Smith, Jenny L, Mohtashamian, Arash, Olson, Niels, Peng, Lily H, Hipp, Jason D, Stumpe, Martin C
Published in Archives of pathology & laboratory medicine (1976) (01.07.2019)
Published in Archives of pathology & laboratory medicine (1976) (01.07.2019)
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Journal Article
CEBPA-bZip mutations are associated with favorable prognosis in de novo AML: a report from the Children's Oncology Group
Tarlock, Katherine, Lamble, Adam J., Wang, Yi-Cheng, Gerbing, Robert B., Ries, Rhonda E., Loken, Michael R., Brodersen, Lisa Eidenschink, Pardo, Laura, Leonti, Amanda, Smith, Jenny L., Hylkema, Tiffany A., Woods, William G., Cooper, Todd M., Kolb, E. Anders, Gamis, Alan S., Aplenc, Richard, Alonzo, Todd A., Meshinchi, Soheil
Published in Blood (30.09.2021)
Published in Blood (30.09.2021)
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Journal Article
Publisher Correction: Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer
Nagpal, Kunal, Foote, Davis, Liu, Yun, Chen, Po-Hsuan Cameron, Wulczyn, Ellery, Tan, Fraser, Olson, Niels, Smith, Jenny L., Mohtashamian, Arash, Wren, James H., Corrado, Greg S., MacDonald, Robert, Peng, Lily H., Amin, Mahul B., Evans, Andrew J., Sangoi, Ankur R., Mermel, Craig H., Hipp, Jason D., Stumpe, Martin C.
Published in NPJ digital medicine (19.11.2019)
Published in NPJ digital medicine (19.11.2019)
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Journal Article
Prognostic impact of CSF3R mutations in favorable risk childhood acute myeloid leukemia
Tarlock, Katherine, Alonzo, Todd, Wang, Yi-Cheng, Gerbing, Robert B., Ries, Rhonda E., Hylkema, Tiffany, Smith, Jenny L., Maxson, Julia E., Meshinchi, Soheil
Published in Blood (30.04.2020)
Published in Blood (30.04.2020)
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Journal Article
Genome wide association study of 5 agronomic traits in olive (Olea europaea L.)
Kaya, Hilal Betul, Akdemir, Deniz, Lozano, Roberto, Cetin, Oznur, Sozer Kaya, Hulya, Sahin, Mustafa, Smith, Jenny L., Tanyolac, Bahattin, Jannink, Jean-Luc
Published in Scientific reports (10.12.2019)
Published in Scientific reports (10.12.2019)
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Journal Article
CREBBP alterations are associated with a poor prognosis in de novo AML
Lamble, Adam J., Hagiwara, Kohei, Gerbing, Robert B., Smith, Jenny L., Kolekar, Pandurang, Ries, Rhonda E., Kolb, Edward A., Alonzo, Todd A., Ma, Xiaotu, Meshinchi, Soheil
Published in Blood (27.04.2023)
Published in Blood (27.04.2023)
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Journal Article
Long Noncoding RNA Expression Independently Predicts Outcome in Pediatric Acute Myeloid Leukemia
Farrar, Jason E, Smith, Jenny L, Othus, Megan, Huang, Benjamin J, Wang, Yi-Cheng, Ries, Rhonda, Hylkema, Tiffany, Pogosova-Agadjanyan, Era L, Challa, Sneha, Leonti, Amanda, Shaw, Timothy I, Triche, Jr, Timothy J, Gamis, Alan S, Aplenc, Richard, Kolb, E Anders, Ma, Xiaotu, Stirewalt, Derek L, Alonzo, Todd A, Meshinchi, Soheil
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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