Ribosomal Database Project: data and tools for high throughput rRNA analysis
Cole, James R, Wang, Qiong, Fish, Jordan A, Chai, Benli, McGarrell, Donna M, Sun, Yanni, Brown, C Titus, Porras-Alfaro, Andrea, Kuske, Cheryl R, Tiedje, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis
Challacombe, Jean F, Hesse, Cedar N, Bramer, Lisa M, McCue, Lee Ann, Lipton, Mary, Purvine, Samuel, Nicora, Carrie, Gallegos-Graves, La Verne, Porras-Alfaro, Andrea, Kuske, Cheryl R
Published in BMC genomics (12.12.2019)
Published in BMC genomics (12.12.2019)
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Microbial biogeography: putting microorganisms on the map
Martiny, Jennifer B. Hughes, Bohannan, Brendan J.M, Brown, James H, Colwell, Robert K, Fuhrman, Jed A, Green, Jessica L, Horner-Devine, M. Claire, Kane, Matthew, Krumins, Jennifer Adams, Kuske, Cheryl R, Morin, Peter J, Naeem, Shahid, Øvreås, Lise, Reysenbach, Anna-Louise, Smith, Val H, Staley, James T
Published in Nature reviews. Microbiology (01.02.2006)
Published in Nature reviews. Microbiology (01.02.2006)
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Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
Deshpande, Vinita, Wang, Qiong, Greenfield, Paul, Charleston, Michael, Porras-Alfaro, Andrea, Kuske, Cheryl R., Cole, James R., Midgley, David J, Tran-Dinh, Nai
Published in Mycologia (01.01.2016)
Published in Mycologia (01.01.2016)
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Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes
Liu, Kuan-Liang, Porras-Alfaro, Andrea, Kuske, Cheryl R, Eichorst, Stephanie A, Xie, Gary
Published in Applied and Environmental Microbiology (01.03.2012)
Published in Applied and Environmental Microbiology (01.03.2012)
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From Genus to Phylum: Large-Subunit and Internal Transcribed Spacer rRNA Operon Regions Show Similar Classification Accuracies Influenced by Database Composition
Porras-Alfaro, Andrea, Liu, Kuan-Liang, Kuske, Cheryl R, Xie, Gary
Published in Applied and Environmental Microbiology (01.02.2014)
Published in Applied and Environmental Microbiology (01.02.2014)
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Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau
Yeager, Chris M, Gallegos-Graves, La Verne, Dunbar, John, Hesse, Cedar N, Daligault, Hajnalka, Kuske, Cheryl R
Published in Applied and environmental microbiology (15.03.2017)
Published in Applied and environmental microbiology (15.03.2017)
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Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Ward, Naomi L, Challacombe, Jean F, Janssen, Peter H, Henrissat, Bernard, Coutinho, Pedro M, Wu, Martin, Xie, Gary, Haft, Daniel H, Sait, Michelle, Badger, Jonathan, Barabote, Ravi D, Bradley, Brent, Brettin, Thomas S, Brinkac, Lauren M, Bruce, David, Creasy, Todd, Daugherty, Sean C, Davidsen, Tanja M, DeBoy, Robert T, Detter, J. Chris, Dodson, Robert J, Durkin, A. Scott, Ganapathy, Anuradha, Gwinn-Giglio, Michelle, Han, Cliff S, Khouri, Hoda, Kiss, Hajnalka, Kothari, Sagar P, Madupu, Ramana, Nelson, Karen E, Nelson, William C, Paulsen, Ian, Penn, Kevin, Ren, Qinghu, Rosovitz, M.J, Selengut, Jeremy D, Shrivastava, Susmita, Sullivan, Steven A, Tapia, Roxanne, Thompson, L. Sue, Watkins, Kisha L, Yang, Qi, Yu, Chunhui, Zafar, Nikhat, Zhou, Liwei, Kuske, Cheryl R
Published in Applied and Environmental Microbiology (01.04.2009)
Published in Applied and Environmental Microbiology (01.04.2009)
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Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
DUNBAR, John, TICKNOR, Lawrence O, KUSKE, Cheryl R
Published in Applied and Environmental Microbiology (01.01.2001)
Published in Applied and Environmental Microbiology (01.01.2001)
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Benefits of symbiotic ectomycorrhizal fungi to plant water relations depend on plant genotype in pinyon pine
Sevanto, Sanna, Gehring, Catherine A., Ryan, Max G., Patterson, Adair, Losko, Adrian S., Vogel, Sven C., Carter, Kelsey R., Dickman, L. Turin, Espy, Michelle A., Kuske, Cheryl R.
Published in Scientific reports (02.09.2023)
Published in Scientific reports (02.09.2023)
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Ectomycorrhizal and Dark Septate Fungal Associations of Pinyon Pine Are Differentially Affected by Experimental Drought and Warming
Gehring, Catherine, Sevanto, Sanna, Patterson, Adair, Ulrich, Danielle E M, Kuske, Cheryl R
Published in Frontiers in plant science (20.10.2020)
Published in Frontiers in plant science (20.10.2020)
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High bacterial diversity of biological soil crusts in water tracks over permafrost in the high arctic polar desert
Steven, Blaire, Lionard, Marie, Kuske, Cheryl R, Vincent, Warwick F
Published in PloS one (13.08.2013)
Published in PloS one (13.08.2013)
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