Dynamic Competition of Polycomb and Trithorax in Transcriptional Programming
Kuroda, Mitzi I, Kang, Hyuckjoon, De, Sandip, Kassis, Judith A
Published in Annual review of biochemistry (20.06.2020)
Published in Annual review of biochemistry (20.06.2020)
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The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains
Alekseyenko, Artyom A, Walsh, Erica M, Wang, Xin, Grayson, Adlai R, Hsi, Peter T, Kharchenko, Peter V, Kuroda, Mitzi I, French, Christopher A
Published in Genes & development (15.07.2015)
Published in Genes & development (15.07.2015)
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genomic binding sites of a noncoding RNA
Simon, Matthew D, Wang, Charlotte I, Kharchenko, Peter V, West, Jason A, Chapman, Brad A, Alekseyenko, Artyom A, Borowsky, Mark L, Kuroda, Mitzi I, Kingston, Robert E
Published in Proceedings of the National Academy of Sciences - PNAS (20.12.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (20.12.2011)
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Journal Article
Ectopic protein interactions within BRD4–chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma
Alekseyenko, Artyom A., Walsh, Erica M., Zee, Barry M., Pakozdi, Tibor, Hsi, Peter, Lemieux, Madeleine E., Dal Cin, Paola, Ince, Tan A., Kharchenko, Peter V., Kuroda, Mitzi I., French, Christopher A.
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2017)
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Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification
Alekseyenko, Artyom A., Gorchakov, Andrey A., Kharchenko, Peter V., Kuroda, Mitzi I.
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
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Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
Riddle, Nicole C, Minoda, Aki, Kharchenko, Peter V, Alekseyenko, Artyom A, Schwartz, Yuri B, Tolstorukov, Michael Y, Gorchakov, Andrey A, Jaffe, Jacob D, Kennedy, Cameron, Linder-Basso, Daniela, Peach, Sally E, Shanower, Gregory, Zheng, Haiyan, Kuroda, Mitzi I, Pirrotta, Vincenzo, Park, Peter J, Elgin, Sarah C R, Karpen, Gary H
Published in Genome research (01.02.2011)
Published in Genome research (01.02.2011)
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Nature and function of insulator protein binding sites in the Drosophila genome
Schwartz, Yuri B, Linder-Basso, Daniela, Kharchenko, Peter V, Tolstorukov, Michael Y, Kim, Maria, Li, Hua-Bing, Gorchakov, Andrey A, Minoda, Aki, Shanower, Gregory, Alekseyenko, Artyom A, Riddle, Nicole C, Jung, Youngsook L, Gu, Tingting, Plachetka, Annette, Elgin, Sarah C R, Kuroda, Mitzi I, Park, Peter J, Savitsky, Mikhail, Karpen, Gary H, Pirrotta, Vincenzo
Published in Genome research (01.11.2012)
Published in Genome research (01.11.2012)
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Chromatin proteins captured by ChIP–mass spectrometry are linked to dosage compensation in Drosophila
Wang, Charlotte I, Alekseyenko, Artyom A, LeRoy, Gary, Elia, Andrew EH, Gorchakov, Andrey A, Britton, Laura-Mae P, Elledge, Stephen J, Kharchenko, Peter V, Garcia, Benjamin A, Kuroda, Mitzi I
Published in Nature structural & molecular biology (01.02.2013)
Published in Nature structural & molecular biology (01.02.2013)
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Impact of sequencing depth in ChIP-seq experiments
Jung, Youngsook L., Luquette, Lovelace J., Ho, Joshua W.K., Ferrari, Francesco, Tolstorukov, Michael, Minoda, Aki, Issner, Robbyn, Epstein, Charles B., Karpen, Gary H., Kuroda, Mitzi I., Park, Peter J.
Published in Nucleic acids research (01.05.2014)
Published in Nucleic acids research (01.05.2014)
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Journal Article
A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome
Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Published in Cell (22.08.2008)
Published in Cell (22.08.2008)
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MSL Complex Is Attracted to Genes Marked by H3K36 Trimethylation Using a Sequence-Independent Mechanism
Larschan, Erica, Alekseyenko, Artyom A., Gortchakov, Andrey A., Peng, Shouyong, Li, Bing, Yang, Pok, Workman, Jerry L., Park, Peter J., Kuroda, Mitzi I.
Published in Molecular cell (12.10.2007)
Published in Molecular cell (12.10.2007)
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Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry
Zee, Barry M., Alekseyenko, Artyom A., McElroy, Kyle A., Kuroda, Mitzi I.
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
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Journal Article
The Oncoprotein BRD4-NUT Generates Aberrant Histone Modification Patterns
Zee, Barry M, Dibona, Amy B, Alekseyenko, Artyom A, French, Christopher A, Kuroda, Mitzi I
Published in PloS one (03.10.2016)
Published in PloS one (03.10.2016)
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Journal Article
“Jump Start and Gain” Model for Dosage Compensation in Drosophila Based on Direct Sequencing of Nascent Transcripts
Ferrari, Francesco, Plachetka, Annette, Alekseyenko, Artyom A., Jung, Youngsook L., Ozsolak, Fatih, Kharchenko, Peter V., Park, Peter J., Kuroda, Mitzi I.
Published in Cell reports (Cambridge) (14.11.2013)
Published in Cell reports (Cambridge) (14.11.2013)
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Journal Article
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila
Alekseyenko, Artyom A, Ellison, Christopher E, Gorchakov, Andrey A, Zhou, Qi, Kaiser, Vera B, Toda, Nick, Walton, Zaak, Peng, Shouyong, Park, Peter J, Bachtrog, Doris, Kuroda, Mitzi I
Published in Genes & development (15.04.2013)
Published in Genes & development (15.04.2013)
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Journal Article
The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila melanogaster X chromosome
Kuroda, Mitzi I, Sural, Tuba H, Peng, Shouyong, Li, Bing, Workman, Jerry L, Park, Peter J
Published in Nature structural & molecular biology (01.12.2008)
Published in Nature structural & molecular biology (01.12.2008)
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Journal Article
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
Ruvkun, Gary, Pasquinelli, Amy E, Reinhart, Brenda J, Slack, Frank, Martindale, Mark Q, Kuroda, Mitzi I, Maller, Betsy, Hayward, David C, Ball, Eldon E, Degnan, Bernard, Müller, Peter, Spring, Jürg, Srinivasan, Ashok, Fishman, Mark, Finnerty, John, Corbo, Joseph, Levine, Michael, Leahy, Patrick, Davidson, Eric
Published in Nature (London) (02.11.2000)
Published in Nature (London) (02.11.2000)
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Journal Article
Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation
Larschan, Erica, Soruco, Marcela M L, Lee, Ok-Kyung, Peng, Shouyong, Bishop, Eric, Chery, Jessica, Goebel, Karen, Feng, Jessica, Park, Peter J, Kuroda, Mitzi I
Published in PLoS genetics (01.07.2012)
Published in PLoS genetics (01.07.2012)
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