Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response
Alasoo, Kaur, Rodrigues, Julia, Mukhopadhyay, Subhankar, Knights, Andrew J., Mann, Alice L., Kundu, Kousik, Hale, Christine, Dougan, Gordon, Gaffney, Daniel J.
Published in Nature genetics (01.03.2018)
Published in Nature genetics (01.03.2018)
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Tumors induce de novo steroid biosynthesis in T cells to evade immunity
Mahata, Bidesh, Pramanik, Jhuma, van der Weyden, Louise, Polanski, Krzysztof, Kar, Gozde, Riedel, Angela, Chen, Xi, Fonseca, Nuno A., Kundu, Kousik, Campos, Lia S., Ryder, Edward, Duddy, Graham, Walczak, Izabela, Okkenhaug, Klaus, Adams, David J., Shields, Jacqueline D., Teichmann, Sarah A.
Published in Nature communications (17.07.2020)
Published in Nature communications (17.07.2020)
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Journal Article
Genetic perturbation of PU.1 binding and chromatin looping at neutrophil enhancers associates with autoimmune disease
Watt, Stephen, Vasquez, Louella, Walter, Klaudia, Mann, Alice L., Kundu, Kousik, Chen, Lu, Sims, Ying, Ecker, Simone, Burden, Frances, Farrow, Samantha, Farr, Ben, Iotchkova, Valentina, Elding, Heather, Mead, Daniel, Tardaguila, Manuel, Ponstingl, Hannes, Richardson, David, Datta, Avik, Flicek, Paul, Clarke, Laura, Downes, Kate, Pastinen, Tomi, Fraser, Peter, Frontini, Mattia, Javierre, Biola-Maria, Spivakov, Mikhail, Soranzo, Nicole
Published in Nature communications (16.04.2021)
Published in Nature communications (16.04.2021)
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Journal Article
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Raden, Martin, Ali, Syed M, Alkhnbashi, Omer S, Busch, Anke, Costa, Fabrizio, Davis, Jason A, Eggenhofer, Florian, Gelhausen, Rick, Georg, Jens, Heyne, Steffen, Hiller, Michael, Kundu, Kousik, Kleinkauf, Robert, Lott, Steffen C, Mohamed, Mostafa M, Mattheis, Alexander, Miladi, Milad, Richter, Andreas S, Will, Sebastian, Wolff, Joachim, Wright, Patrick R, Backofen, Rolf
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Enteric commensal bacteria potentiate epithelial restitution via reactive oxygen species-mediated inactivation of focal adhesion kinase phosphatases
Swanson, Phillip A. II, Kumar, Amrita, Samarin, Stanislav, Vijay-Kumar, Matam, Kundu, Kousik, Murthy, Niren, Hansen, Jason, Nusrat, Asma, Neish, Andrew S
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2011)
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Journal Article
Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases
Cai, Na, Gomez-Duran, Aurora, Yonova-Doing, Ekaterina, Kundu, Kousik, Burgess, Annette I., Golder, Zoe J., Calabrese, Claudia, Bonder, Marc J., Camacho, Marta, Lawson, Rachael A., Li, Lixin, Williams-Gray, Caroline H., Di Angelantonio, Emanuele, Roberts, David J., Watkins, Nick A., Ouwehand, Willem H., Butterworth, Adam S., Stewart, Isobel D., Pietzner, Maik, Wareham, Nick J., Langenberg, Claudia, Danesh, John, Walter, Klaudia, Rothwell, Peter M., Howson, Joanna M. M., Stegle, Oliver, Chinnery, Patrick F., Soranzo, Nicole
Published in Nature medicine (01.09.2021)
Published in Nature medicine (01.09.2021)
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Journal Article
Genetic influences on circulating retinol and its relationship to human health
Reay, William R., Kiltschewskij, Dylan J., Di Biase, Maria A., Gerring, Zachary F., Kundu, Kousik, Surendran, Praveen, Greco, Laura A., Clarke, Erin D., Collins, Clare E., Mondul, Alison M., Albanes, Demetrius, Cairns, Murray J.
Published in Nature communications (19.02.2024)
Published in Nature communications (19.02.2024)
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Journal Article
Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput data
Kundu, Kousik, Costa, Fabrizio, Huber, Michael, Reth, Michael, Backofen, Rolf
Published in PloS one (17.05.2013)
Published in PloS one (17.05.2013)
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Insights into the genetic architecture of haematological traits from deep phenotyping and whole-genome sequencing for two Mediterranean isolated populations
Kuchenbaecker, Karoline, Gilly, Arthur, Suveges, Daniel, Southam, Lorraine, Giannakopoulou, Olga, Kilian, Britt, Tsafantakis, Emmanouil, Karaleftheri, Maria, Farmaki, Aliki-Eleni, Gurdasani, Deepti, Kundu, Kousik, Sandhu, Manjinder S., Danesh, John, Butterworth, Adam, Barroso, Inês, Dedoussis, George, Zeggini, Eleftheria
Published in Scientific reports (21.01.2022)
Published in Scientific reports (21.01.2022)
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Lactobacillus rhamnosus blocks inflammatory signaling in vivo via reactive oxygen species generation
Lin, Patricia W., Myers, Loren E.S., Ray, Laurie, Song, Shuh-Chyung, Nasr, Tala R., Berardinelli, Andrew J., Kundu, Kousik, Murthy, Niren, Hansen, Jason M., Neish, Andrew S.
Published in Free radical biology & medicine (15.10.2009)
Published in Free radical biology & medicine (15.10.2009)
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Journal Article
Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits
Gilly, Arthur, Suveges, Daniel, Kuchenbaecker, Karoline, Pollard, Martin, Southam, Lorraine, Hatzikotoulas, Konstantinos, Farmaki, Aliki-Eleni, Bjornland, Thea, Waples, Ryan, Appel, Emil V. R., Casalone, Elisabetta, Melloni, Giorgio, Kilian, Britt, Rayner, Nigel W., Ntalla, Ioanna, Kundu, Kousik, Walter, Klaudia, Danesh, John, Butterworth, Adam, Barroso, Inês, Tsafantakis, Emmanouil, Dedoussis, George, Moltke, Ida, Zeggini, Eleftheria
Published in Nature communications (07.11.2018)
Published in Nature communications (07.11.2018)
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Journal Article
The influence of rare variants in circulating metabolic biomarkers
Riveros-Mckay, Fernando, Oliver-Williams, Clare, Karthikeyan, Savita, Walter, Klaudia, Kundu, Kousik, Ouwehand, Willem H, Roberts, David, Di Angelantonio, Emanuele, Soranzo, Nicole, Danesh, John, Wheeler, Eleanor, Zeggini, Eleftheria, Butterworth, Adam S, Barroso, Inês
Published in PLoS genetics (09.03.2020)
Published in PLoS genetics (09.03.2020)
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Journal Article
Quantitative imaging of cartilage and bone morphology, reactive oxygen species, and vascularization in a rodent model of osteoarthritis
Xie, LiQin, Lin, Angela S. P., Kundu, Kousik, Levenston, Marc E., Murthy, Niren, Guldberg, Robert E.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.06.2012)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.06.2012)
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Journal Article
A fluorescent peroxidase probe increases the sensitivity of commercial ELISAs by two orders of magnitude
Acharya, Abhinav P, Nafisi, Parsa M, Gardner, Austin, Mackay, Joanna L, Kundu, Kousik, Kumar, Sanjay, Murthy, Niren
Published in Chemical communications (Cambridge, England) (14.11.2013)
Published in Chemical communications (Cambridge, England) (14.11.2013)
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Journal Article
Immune disease variants modulate gene expression in regulatory CD4+ T cells
Bossini-Castillo, Lara, Glinos, Dafni A., Kunowska, Natalia, Golda, Gosia, Lamikanra, Abigail A., Spitzer, Michaela, Soskic, Blagoje, Cano-Gamez, Eddie, Smyth, Deborah J., Cattermole, Claire, Alasoo, Kaur, Mann, Alice, Kundu, Kousik, Lorenc, Anna, Soranzo, Nicole, Dunham, Ian, Roberts, David J., Trynka, Gosia
Published in Cell genomics (13.04.2022)
Published in Cell genomics (13.04.2022)
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Journal Article
Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits
Gilly, Arthur, Suveges, Daniel, Kuchenbaecker, Karoline, Pollard, Martin, Southam, Lorraine, Hatzikotoulas, Konstantinos, Farmaki, Aliki-Eleni, Bjornland, Thea, Waples, Ryan, Appel, Emil V. R., Casalone, Elisabetta, Melloni, Giorgio, Kilian, Britt, Rayner, Nigel W., Ntalla, Ioanna, Kundu, Kousik, Walter, Klaudia, Danesh, John, Butterworth, Adam, Barroso, Inês, Tsafantakis, Emmanouil, Dedoussis, George, Moltke, Ida, Zeggini, Eleftheria
Published in Nature communications (19.12.2018)
Published in Nature communications (19.12.2018)
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