Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity
Capello, Michela, Vykoukal, Jody V., Katayama, Hiroyuki, Bantis, Leonidas E., Wang, Hong, Kundnani, Deepali L., Aguilar-Bonavides, Clemente, Aguilar, Mitzi, Tripathi, Satyendra C., Dhillon, Dilsher S., Momin, Amin A., Peters, Haley, Katz, Matthew H., Alvarez, Hector, Bernard, Vincent, Ferri-Borgogno, Sammy, Brand, Randall, Adler, Douglas G., Firpo, Matthew A., Mulvihill, Sean J., Molldrem, Jeffrey J., Feng, Ziding, Taguchi, Ayumu, Maitra, Anirban, Hanash, Samir M.
Published in Nature communications (16.01.2019)
Published in Nature communications (16.01.2019)
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Journal Article
A Plasma-Derived Protein-Metabolite Multiplexed Panel for Early-Stage Pancreatic Cancer
Fahrmann, Johannes F, Bantis, Leonidas E, Capello, Michela, Scelo, Ghislaine, Dennison, Jennifer B, Patel, Nikul, Murage, Eunice, Vykoukal, Jody, Kundnani, Deepali L, Foretova, Lenka, Fabianova, Eleonora, Holcatova, Ivana, Janout, Vladimir, Feng, Ziding, Yip-Schneider, Michele, Zhang, Jianjun, Brand, Randall, Taguchi, Ayumu, Maitra, Anirban, Brennan, Paul, Max Schmidt, C, Hanash, Samir
Published in JNCI : Journal of the National Cancer Institute (01.04.2019)
Published in JNCI : Journal of the National Cancer Institute (01.04.2019)
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Journal Article
Sequential Validation of Blood-Based Protein Biomarker Candidates for Early-Stage Pancreatic Cancer
Capello, Michela, Bantis, Leonidas E, Scelo, Ghislaine, Zhao, Yang, Li, Peng, Dhillon, Dilsher S, Patel, Nikul J, Kundnani, Deepali L, Wang, Hong, Abbruzzese, James L, Maitra, Anirban, Tempero, Margaret A, Brand, Randall, Firpo, Matthew A, Mulvihill, Sean J, Katz, Matthew H, Brennan, Paul, Feng, Ziding, Taguchi, Ayumu, Hanash, Samir M
Published in JNCI : Journal of the National Cancer Institute (01.04.2017)
Published in JNCI : Journal of the National Cancer Institute (01.04.2017)
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Journal Article
rNMPID: a database for riboNucleoside MonoPhosphates in DNA
Yang, Jingcheng, Sun, Mo, Ran, Zihan, Yang, Taehwan, Kundnani, Deepali L, Storici, Francesca, Xu, Penghao
Published in Bioinformatics advances (2024)
Published in Bioinformatics advances (2024)
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Journal Article
Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome
Xu, Penghao, Yang, Taehwan, Kundnani, Deepali L, Sun, Mo, Marsili, Stefania, Gombolay, Alli L, Jeon, Youngkyu, Newnam, Gary, Balachander, Sathya, Bazzani, Veronica, Baccarani, Umberto, Park, Vivian S, Tao, Sijia, Lori, Adriana, Schinazi, Raymond F, Kim, Baek, Pursell, Zachary F, Tell, Gianluca, Vascotto, Carlo, Storici, Francesca
Published in Nucleic acids research (09.02.2024)
Published in Nucleic acids research (09.02.2024)
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Journal Article
Gene Co-Expression Analysis of Human RNASEH2A Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation
Marsili, Stefania, Tichon, Ailone, Kundnani, Deepali, Storici, Francesca
Published in Biology (Basel, Switzerland) (13.03.2021)
Published in Biology (Basel, Switzerland) (13.03.2021)
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Journal Article
Assessment of Lung Cancer Risk on the Basis of a Biomarker Panel of Circulating Proteins
Guida, Florence, Sun, Nan, Bantis, Leonidas E, Muller, David C, Li, Peng, Taguchi, Ayumu, Dhillon, Dilsher, Kundnani, Deepali L, Patel, Nikul J, Yan, Qingxiang, Byrnes, Graham, Moons, Karel G M, Tjønneland, Anne, Panico, Salvatore, Agnoli, Claudia, Vineis, Paolo, Palli, Domenico, Bueno-de-Mesquita, Bas, Peeters, Petra H, Agudo, Antonio, Huerta, Jose M, Dorronsoro, Miren, Barranco, Miguel Rodriguez, Ardanaz, Eva, Travis, Ruth C, Byrne, Karl Smith, Boeing, Heiner, Steffen, Annika, Kaaks, Rudolf, Hüsing, Anika, Trichopoulou, Antonia, Lagiou, Pagona, La Vecchia, Carlo, Severi, Gianluca, Boutron-Ruault, Marie-Christine, Sandanger, Torkjel M, Weiderpass, Elisabete, Nøst, Therese H, Tsilidis, Kostas, Riboli, Elio, Grankvist, Kjell, Johansson, Mikael, Goodman, Gary E, Feng, Ziding, Brennan, Paul, Johansson, Mattias, Hanash, Samir M
Published in JAMA oncology (01.10.2018)
Published in JAMA oncology (01.10.2018)
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Journal Article
Contribution of a Blood-Based Protein Biomarker Panel to the Classification of Indeterminate Pulmonary Nodules
Ostrin, Edwin J., Bantis, Leonidas E., Wilson, David O., Patel, Nikul, Wang, Renwei, Kundnani, Deepali, Adams-Haduch, Jennifer, Dennison, Jennifer B., Fahrmann, Johannes F., Chiu, Hsienchang Thomas, Gazdar, Adi, Feng, Ziding, Yuan, Jian-Min, Hanash, Samir M.
Published in Journal of thoracic oncology (01.02.2021)
Published in Journal of thoracic oncology (01.02.2021)
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Journal Article
Testing the gene expression classification of the EMT spectrum
Jia, Dongya, George, Jason T, Tripathi, Satyendra C, Kundnani, Deepali L, Lu, Mingyang, Hanash, Samir M, Onuchic, José N, Jolly, Mohit Kumar, Levine, Herbert
Published in Physical biology (18.01.2019)
Published in Physical biology (18.01.2019)
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Journal Article
Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutières syndrome ortholog mutants of Saccharomyces cerevisiae
Kundnani, Deepali L., Yang, Taehwan, Gombolay, Alli L., Mukherjee, Kuntal, Newnam, Gary, Meers, Chance, Verma, Ishika, Chhatlani, Kirti, Mehta, Zeel H., Mouawad, Celine, Storici, Francesca
Published in iScience (21.06.2024)
Published in iScience (21.06.2024)
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Journal Article
NFATc Acts as a Non-Canonical Phenotypic Stability Factor for a Hybrid Epithelial/Mesenchymal Phenotype
Subbalakshmi, Ayalur Raghu, Kundnani, Deepali, Biswas, Kuheli, Ghosh, Anandamohan, Hanash, Samir M., Tripathi, Satyendra C., Jolly, Mohit Kumar
Published in Frontiers in oncology (08.09.2020)
Published in Frontiers in oncology (08.09.2020)
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Journal Article
Proteome Profiling Uncovers an Autoimmune Response Signature That Reflects Ovarian Cancer Pathogenesis
Kobayashi, Makoto, Katayama, Hiroyuki, Irajizad, Ehsan, Vykoukal, Jody V, Fahrmann, Johannes F, Kundnani, Deepali L, Yu, Chuan-Yih, Cai, Yining, Hsiao, Fu Chung, Yang, Wei-Lei, Lu, Zhen, Celestino, Joseph, Long, James P, Do, Kim-Ann, Lu, Karen H, Ladd, Jon J, Urban, Nicole, Bast, Jr, Robert C, Hanash, Samir M
Published in Cancers (19.02.2020)
Published in Cancers (19.02.2020)
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Journal Article
CES2 Expression in Pancreatic Adenocarcinoma Is Predictive of Response to Irinotecan and Is Associated With Type 2 Diabetes
Capello, Michela, Fahrmann, Johannes F, Rios Perez, Mayrim V, Vykoukal, Jody V, Irajizad, Ehsan, Tripathi, Satyendra C, Roife, David, Bantis, Leonidas E, Kang, Ya'an, Kundnani, Deepali L, Xu, Hanwen, Prakash, Laura R, Long, James P, Katayama, Hiroyuki, Fleury, Alia, Ferri-Borgogno, Sammy, Baluya, Dodge L, Dennison, Jennifer B, Aguilar-Bonavides, Clemente, Casabar, Julian P, Celiktas, Muge, Do, Kim-Anh, Fiehn, Oliver, Maitra, Anirban, Wang, Huamin, Feng, Ziding, Chiao, Paul J, Katz, Matthew H, Fleming, Jason B, Hanash, Samir M
Published in JCO precision oncology (01.11.2020)
Published in JCO precision oncology (01.11.2020)
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Journal Article
Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutières syndrome (AGS)-ortholog mutants of Saccharomyces cerevisiae
Kundnani, Deepali L, Yang, Taehwan, Gombolay, Alli L, Mukherjee, Kuntal, Newnam, Gary, Meers, Chance, Mehta, Zeel H, Mouawad, Celine, Storici, Francesca
Published in bioRxiv (02.10.2023)
Published in bioRxiv (02.10.2023)
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Journal Article