by Amemiya, Haley M., Kundaje, Anshul, Boyle, Alan P.
Published in Scientific reports (27.06.2019)

by Benayoun, Bérénice A., Pollina, Elizabeth A., Ucar, Duygu, Mahmoudi, Salah, Karra, Kalpana, Wong, Edith D., Devarajan, Keerthana, Daugherty, Aaron C., Kundaje, Anshul B., Mancini, Elena, Hitz, Benjamin C., Gupta, Rakhi, Rando, Thomas A., Baker, Julie C., Snyder, Michael P., Cherry, J. Michael, Brunet, Anne
Published in Cell (31.07.2014)

by Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien
Published in Nature biotechnology (01.06.2019)

by Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis
Published in Nature (London) (19.02.2015)

by Trevino, Alexandro E., Müller, Fabian, Andersen, Jimena, Sundaram, Laksshman, Kathiria, Arwa, Shcherbina, Anna, Farh, Kyle, Chang, Howard Y., Pașca, Anca M., Kundaje, Anshul, Pașca, Sergiu P., Greenleaf, William J.
Published in Cell (16.09.2021)

by Corces, M Ryan, Trevino, Alexandro E, Hamilton, Emily G, Greenside, Peyton G, Sinnott-Armstrong, Nicholas A, Vesuna, Sam, Satpathy, Ansuman T, Rubin, Adam J, Montine, Kathleen S, Wu, Beijing, Kathiria, Arwa, Cho, Seung Woo, Mumbach, Maxwell R, Carter, Ava C, Kasowski, Maya, Orloff, Lisa A, Risca, Viviana I, Kundaje, Anshul, Khavari, Paul A, Montine, Thomas J, Greenleaf, William J, Chang, Howard Y
Published in Nature methods (01.10.2017)

by Corces, M Ryan, Buenrostro, Jason D, Wu, Beijing, Greenside, Peyton G, Chan, Steven M, Koenig, Julie L, Snyder, Michael P, Pritchard, Jonathan K, Kundaje, Anshul, Greenleaf, William J, Majeti, Ravindra, Chang, Howard Y
Published in Nature genetics (01.10.2016)

by Horton, Connor A., Alexandari, Amr M., Hayes, Michael G. B., Marklund, Emil, Schaepe, Julia M., Aditham, Arjun K., Shah, Nilay, Suzuki, Peter H., Shrikumar, Avanti, Afek, Ariel, Greenleaf, William J., Gordân, Raluca, Zeitlinger, Julia, Kundaje, Anshul, Fordyce, Polly M.
Published in Science (American Association for the Advancement of Science) (22.09.2023)

by Shipony, Zohar, Marinov, Georgi K., Swaffer, Matthew P., Sinnott-Armstrong, Nicholas A., Skotheim, Jan M., Kundaje, Anshul, Greenleaf, William J.
Published in Nature methods (01.03.2020)

by Linder, Johannes, Koplik, Samantha E., Kundaje, Anshul, Seelig, Georg
Published in Genome Biology (05.11.2022)

by Stowers, Ryan S., Shcherbina, Anna, Israeli, Johnny, Gruber, Joshua J., Chang, Julie, Nam, Sungmin, Rabiee, Atefeh, Teruel, Mary N., Snyder, Michael P., Kundaje, Anshul, Chaudhuri, Ovijit
Published in Nature biomedical engineering (01.12.2019)

by Cheng, Jun, Çelik, Muhammed Hasan, Kundaje, Anshul, Gagneur, Julien
Published in Genome Biology (31.03.2021)

by Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Published in Journal of the Royal Society interface (01.04.2018)

by Grubert, Fabian, Srivas, Rohith, Spacek, Damek  V, Kasowski, Maya, Ruiz-Velasco, Mariana, Sinnott-Armstrong, Nasa, Greenside, Peyton, Narasimha, Anil, Liu, Qing, Geller, Benjamin, Sanghi, Akshay, Kulik, Michael, Sa, Silin, Rabinovitch, Marlene, Kundaje, Anshul, Dalton, Stephen, Zaugg, Judith B., Snyder, Michael
Published in Nature (London) (30.07.2020)

by Morgens, David W., Wainberg, Michael, Boyle, Evan A., Ursu, Oana, Araya, Carlos L., Tsui, C. Kimberly, Haney, Michael S., Hess, Gaelen T., Han, Kyuho, Jeng, Edwin E., Li, Amy, Snyder, Michael P., Greenleaf, William J., Kundaje, Anshul, Bassik, Michael C.
Published in Nature communications (05.05.2017)

by Han, Kyuho, Pierce, Sarah E., Li, Amy, Spees, Kaitlyn, Anderson, Gray R., Seoane, Jose A., Lo, Yuan-Hung, Dubreuil, Michael, Olivas, Micah, Kamber, Roarke A., Wainberg, Michael, Kostyrko, Kaja, Kelly, Marcus R., Yousefi, Maryam, Simpkins, Scott W., Yao, David, Lee, Keonil, Kuo, Calvin J., Jackson, Peter K., Sweet-Cordero, Alejandro, Kundaje, Anshul, Gentles, Andrew J., Curtis, Christina, Winslow, Monte M., Bassik, Michael C.
Published in Nature (London) (01.04.2020)

by Movva, Rajiv, Greenside, Peyton, Marinov, Georgi K., Nair, Surag, Shrikumar, Avanti, Kundaje, Anshul
Published in PloS one (17.06.2019)

by Mumbach, Maxwell R, Satpathy, Ansuman T, Boyle, Evan A, Dai, Chao, Gowen, Benjamin G, Cho, Seung Woo, Nguyen, Michelle L, Rubin, Adam J, Granja, Jeffrey M, Kazane, Katelynn R, Wei, Yuning, Nguyen, Trieu, Greenside, Peyton G, Corces, M Ryan, Tycko, Josh, Simeonov, Dimitre R, Suliman, Nabeela, Li, Rui, Xu, Jin, Flynn, Ryan A, Kundaje, Anshul, Khavari, Paul A, Marson, Alexander, Corn, Jacob E, Quertermous, Thomas, Greenleaf, William J, Chang, Howard Y
Published in Nature genetics (01.11.2017)

by Daugherty, Aaron C., Yeo, Robin W., Buenrostro, Jason D., Greenleaf, William J., Kundaje, Anshul, Brunet, Anne
Published in Genome research (01.12.2017)

by Liu, Xin, Sun, Tao, Shcherbina, Anna, Li, Qin, Jarmoskaite, Inga, Kappel, Kalli, Ramaswami, Gokul, Das, Rhiju, Kundaje, Anshul, Li, Jin Billy
Published in Nature communications (12.04.2021)