Salt bridges: Geometrically specific, designable interactions
Donald, Jason E., Kulp, Daniel W., DeGrado, William F.
Published in Proteins, structure, function, and bioinformatics (01.03.2011)
Published in Proteins, structure, function, and bioinformatics (01.03.2011)
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Journal Article
Innate immune recognition of glycans targets HIV nanoparticle immunogens to germinal centers
Tokatlian, Talar, Read, Benjamin J, Jones, Christopher A, Kulp, Daniel W, Menis, Sergey, Chang, Jason Y H, Steichen, Jon M, Kumari, Sudha, Allen, Joel D, Dane, Eric L, Liguori, Alessia, Sangesland, Maya, Lingwood, Daniel, Crispin, Max, Schief, William R, Irvine, Darrell J
Published in Science (American Association for the Advancement of Science) (08.02.2019)
Published in Science (American Association for the Advancement of Science) (08.02.2019)
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Journal Article
Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen
Jardine, Joseph G., Ota, Takayuki, Sok, Devin, Pauthner, Matthias, Kulp, Daniel W., Kalyuzhniy, Oleksandr, Skog, Patrick D., Thinnes, Theresa C., Bhullar, Deepika, Briney, Bryan, Menis, Sergey, Jones, Meaghan, Kubitz, Mike, Spencer, Skye, Adachi, Yumiko, Burton, Dennis R., Schief, William R., Nemazee, David
Published in Science (American Association for the Advancement of Science) (10.07.2015)
Published in Science (American Association for the Advancement of Science) (10.07.2015)
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Journal Article
HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen
Jardine, Joseph G., Kulp, Daniel W., Havenar-Daughton, Colin, Sarkar, Anita, Briney, Bryan, Sok, Devin, Sesterhenn, Fabian, Ereño-Orbea, June, Kalyuzhniy, Oleksandr, Deresa, Isaiah, Hu, Xiaozhen, Spencer, Skye, Jones, Meaghan, Georgeson, Erik, Adachi, Yumiko, Kubitz, Michael, deCamp, Allan C., Julien, Jean-Philippe, Wilson, Ian A., Burton, Dennis R., Crotty, Shane, Schief, William R.
Published in Science (American Association for the Advancement of Science) (25.03.2016)
Published in Science (American Association for the Advancement of Science) (25.03.2016)
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Journal Article
HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies
Steichen, Jon M., Kulp, Daniel W., Tokatlian, Talar, Escolano, Amelia, Dosenovic, Pia, Stanfield, Robyn L., McCoy, Laura E., Ozorowski, Gabriel, Hu, Xiaozhen, Kalyuzhniy, Oleksandr, Briney, Bryan, Schiffner, Torben, Garces, Fernando, Freund, Natalia T., Gitlin, Alexander D., Menis, Sergey, Georgeson, Erik, Kubitz, Michael, Adachi, Yumiko, Jones, Meaghan, Mutafyan, Andrew A., Yun, Dong Soo, Mayer, Christian T., Ward, Andrew B., Burton, Dennis R., Wilson, Ian A., Irvine, Darrell J., Nussenzweig, Michel C., Schief, William R.
Published in Immunity (Cambridge, Mass.) (20.09.2016)
Published in Immunity (Cambridge, Mass.) (20.09.2016)
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Journal Article
Generalized fragment picking in Rosetta: design, protocols and applications
Gront, Dominik, Kulp, Daniel W, Vernon, Robert M, Strauss, Charlie E M, Baker, David
Published in PloS one (24.08.2011)
Published in PloS one (24.08.2011)
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Journal Article
Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches
Pauthner, Matthias, Havenar-Daughton, Colin, Sok, Devin, Nkolola, Joseph P., Bastidas, Raiza, Boopathy, Archana V., Carnathan, Diane G., Chandrashekar, Abishek, Cirelli, Kimberly M., Cottrell, Christopher A., Eroshkin, Alexey M., Guenaga, Javier, Kaushik, Kirti, Kulp, Daniel W., Liu, Jinyan, McCoy, Laura E., Oom, Aaron L., Ozorowski, Gabriel, Post, Kai W., Sharma, Shailendra K., Steichen, Jon M., de Taeye, Steven W., Tokatlian, Talar, Torrents de la Peña, Alba, Butera, Salvatore T., LaBranche, Celia C., Montefiori, David C., Silvestri, Guido, Wilson, Ian A., Irvine, Darrell J., Sanders, Rogier W., Schief, William R., Ward, Andrew B., Wyatt, Richard T., Barouch, Dan H., Crotty, Shane, Burton, Dennis R.
Published in Immunity (Cambridge, Mass.) (20.06.2017)
Published in Immunity (Cambridge, Mass.) (20.06.2017)
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Journal Article
Priming HIV-1 broadly neutralizing antibody precursors in human Ig loci transgenic mice
Sok, Devin, Briney, Bryan, Jardine, Joseph G., Kulp, Daniel W., Menis, Sergey, Pauthner, Matthias, Wood, Andrew, Lee, E-Chiang, Le, Khoa M., Jones, Meaghan, Ramos, Alejandra, Kalyuzhniy, Oleksandr, Adachi, Yumiko, Kuhitz, Michael, MacPherson, Skye, Bradley, Allan, Friedrich, Glenn A., Schief, William R., Burton, Dennis R.
Published in Science (American Association for the Advancement of Science) (30.09.2016)
Published in Science (American Association for the Advancement of Science) (30.09.2016)
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Journal Article
Global site-specific N-glycosylation analysis of HIV envelope glycoprotein
Cao, Liwei, Diedrich, Jolene K, Kulp, Daniel W, Pauthner, Matthias, He, Lin, Park, Sung-Kyu Robin, Sok, Devin, Su, Ching Yao, Delahunty, Claire M, Menis, Sergey, Andrabi, Raiees, Guenaga, Javier, Georgeson, Erik, Kubitz, Michael, Adachi, Yumiko, Burton, Dennis R, Schief, William R, Yates, III, John R, Paulson, James C
Published in Nature communications (28.03.2017)
Published in Nature communications (28.03.2017)
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Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding
Kulp, Daniel W, Steichen, Jon M, Pauthner, Matthias, Hu, Xiaozhen, Schiffner, Torben, Liguori, Alessia, Cottrell, Christopher A, Havenar-Daughton, Colin, Ozorowski, Gabriel, Georgeson, Erik, Kalyuzhniy, Oleksandr, Willis, Jordan R, Kubitz, Michael, Adachi, Yumiko, Reiss, Samantha M, Shin, Mia, de Val, Natalia, Ward, Andrew B, Crotty, Shane, Burton, Dennis R, Schief, William R
Published in Nature communications (21.11.2017)
Published in Nature communications (21.11.2017)
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Journal Article
Immunization for HIV-1 Broadly Neutralizing Antibodies in Human Ig Knockin Mice
Dosenovic, Pia, von Boehmer, Lotta, Escolano, Amelia, Jardine, Joseph, Freund, Natalia T., Gitlin, Alexander D., McGuire, Andrew T., Kulp, Daniel W., Oliveira, Thiago, Scharf, Louise, Pietzsch, John, Gray, Matthew D., Cupo, Albert, van Gils, Marit J., Yao, Kai-Hui, Liu, Cassie, Gazumyan, Anna, Seaman, Michael S., Björkman, Pamela J., Sanders, Rogier W., Moore, John P., Stamatatos, Leonidas, Schief, William R., Nussenzweig, Michel C.
Published in Cell (18.06.2015)
Published in Cell (18.06.2015)
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Journal Article
Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies
Briney, Bryan, Sok, Devin, Jardine, Joseph G., Kulp, Daniel W., Skog, Patrick, Menis, Sergey, Jacak, Ronald, Kalyuzhniy, Oleksandr, de Val, Natalia, Sesterhenn, Fabian, Le, Khoa M., Ramos, Alejandra, Jones, Meaghan, Saye-Francisco, Karen L., Blane, Tanya R., Spencer, Skye, Georgeson, Erik, Hu, Xiaozhen, Ozorowski, Gabriel, Adachi, Yumiko, Kubitz, Michael, Sarkar, Anita, Wilson, Ian A., Ward, Andrew B., Nemazee, David, Burton, Dennis R., Schief, William R.
Published in Cell (08.09.2016)
Published in Cell (08.09.2016)
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Journal Article
The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen
Havenar-Daughton, Colin, Sarkar, Anita, Kulp, Daniel W, Toy, Laura, Hu, Xiaozhen, Deresa, Isaiah, Kalyuzhniy, Oleksandr, Kaushik, Kirti, Upadhyay, Amit A, Menis, Sergey, Landais, Elise, Cao, Liwei, Diedrich, Jolene K, Kumar, Sonu, Schiffner, Torben, Reiss, Samantha M, Seumois, Grégory, Yates, John R, Paulson, James C, Bosinger, Steven E, Wilson, Ian A, Schief, William R, Crotty, Shane
Published in Science translational medicine (04.07.2018)
Published in Science translational medicine (04.07.2018)
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Promiscuous glycan site recognition by antibodies to the high-mannose patch of gp120 broadens neutralization of HIV
Sok, Devin, Doores, Katie J, Briney, Bryan, Le, Khoa M, Saye-Francisco, Karen L, Ramos, Alejandra, Kulp, Daniel W, Julien, Jean-Philippe, Menis, Sergey, Wickramasinghe, Lalinda, Seaman, Michael S, Schief, William R, Wilson, Ian A, Poignard, Pascal, Burton, Dennis R
Published in Science translational medicine (14.05.2014)
Published in Science translational medicine (14.05.2014)
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Journal Article
Design of a switchable eliminase
Korendovych, Ivan V, Kulp, Daniel W, Wu, Yibing, Cheng, Hong, Roder, Heinrich, DeGrado, William F
Published in Proceedings of the National Academy of Sciences - PNAS (26.04.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (26.04.2011)
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Glycan clustering stabilizes the mannose patch of HIV-1 and preserves vulnerability to broadly neutralizing antibodies
Pritchard, Laura K, Spencer, Daniel I R, Royle, Louise, Bonomelli, Camille, Seabright, Gemma E, Behrens, Anna-Janina, Kulp, Daniel W, Menis, Sergey, Krumm, Stefanie A, Dunlop, D Cameron, Crispin, Daniel J, Bowden, Thomas A, Scanlan, Christopher N, Ward, Andrew B, Schief, William R, Doores, Katie J, Crispin, Max
Published in Nature communications (24.06.2015)
Published in Nature communications (24.06.2015)
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Journal Article
Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance
Cirelli, Kimberly M., Carnathan, Diane G., Nogal, Bartek, Martin, Jacob T., Rodriguez, Oscar L., Upadhyay, Amit A., Enemuo, Chiamaka A., Gebru, Etse H., Choe, Yury, Viviano, Federico, Nakao, Catherine, Pauthner, Matthias G., Reiss, Samantha, Cottrell, Christopher A., Smith, Melissa L., Bastidas, Raiza, Gibson, William, Wolabaugh, Amber N., Melo, Mariane B., Cossette, Benjamin, Kumar, Venkatesh, Patel, Nirav B., Tokatlian, Talar, Menis, Sergey, Kulp, Daniel W., Burton, Dennis R., Murrell, Ben, Schief, William R., Bosinger, Steven E., Ward, Andrew B., Watson, Corey T., Silvestri, Guido, Irvine, Darrell J., Crotty, Shane
Published in Cell (16.05.2019)
Published in Cell (16.05.2019)
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