Combining Salmonella Dublin genome information and contact-tracing to substantiate a new approach for improved detection of infectious transmission routes in cattle populations
de Knegt, Leonardo Víctor, Kudirkiene, Eglė, Rattenborg, Erik, Sørensen, Gitte, Denwood, Matthew James, Olsen, John Elmerdahl, Nielsen, Liza Rosenbaum
Published in Preventive veterinary medicine (01.08.2020)
Published in Preventive veterinary medicine (01.08.2020)
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Epidemiology of Salmonella enterica Serovar Dublin in Cattle and Humans in Denmark, 1996 to 2016: a Retrospective Whole-Genome-Based Study
Kudirkiene, Eglė, Sørensen, Gitte, Torpdahl, Mia, de Knegt, Leonardo V, Nielsen, Liza R, Rattenborg, Erik, Ahmed, Shahana, Olsen, John E
Published in Applied and environmental microbiology (21.01.2020)
Published in Applied and environmental microbiology (21.01.2020)
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Diversity and Population Overlap between Avian and Human Escherichia coli Belonging to Sequence Type 95
Jørgensen, Steffen L, Stegger, Marc, Kudirkiene, Eglé, Lilje, Berit, Poulsen, Louise L, Ronco, Troels, Pires Dos Santos, Teresa, Kiil, Kristoffer, Bisgaard, Magne, Pedersen, Karl, Nolan, Lisa K, Price, Lance B, Olsen, Rikke H, Andersen, Paal S, Christensen, Henrik
Published in mSphere (16.01.2019)
Published in mSphere (16.01.2019)
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Emergence of OXA-48-producing Klebsiella pneumoniae in Lithuania, 2023: a multi-cluster, multi-hospital outbreak
Greičius, Paulius, Linkevicius, Marius, Razmuk, Jelena, Sinotova, Jekaterina, Alm, Erik, Svartström, Olov, Bortolaia, Valeria, Kudirkienė, Eglė, Roer, Louise, Hendriksen, Rene S, Tamoliūnaitė, Gabija, Palm, Daniel, Monnet, Dominique L, Kohlenberg, Anke, Griškevičius, Algirdas
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (18.04.2024)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (18.04.2024)
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Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017
Hounmanou, Yaovi Mahuton Gildas, Leekitcharoenphon, Pimlapas, Kudirkiene, Egle, Mdegela, Robinson H, Hendriksen, Rene S, Olsen, John Elmerdahl, Dalsgaard, Anders
Published in PLoS neglected tropical diseases (01.12.2019)
Published in PLoS neglected tropical diseases (01.12.2019)
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Journal Article
Characterisation of Commensal Escherichia coli Isolated from Apparently Healthy Cattle and Their Attendants in Tanzania
Madoshi, Balichene P, Kudirkiene, Egle, Mtambo, Madundo M A, Muhairwa, Amandus P, Lupindu, Athumani M, Olsen, John E
Published in PloS one (15.12.2016)
Published in PloS one (15.12.2016)
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Genome-Based Analysis of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Aquatic Environment and Nile Perch ( Lates niloticus ) of Lake Victoria, Tanzania
Baniga, Zebedayo, Hounmanou, Yaovi M Gildas, Kudirkiene, Egle, Kusiluka, Lughano J M, Mdegela, Robinson H, Dalsgaard, Anders
Published in Frontiers in microbiology (21.02.2020)
Published in Frontiers in microbiology (21.02.2020)
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Journal Article
Treatment with high-dose antidepressants severely exacerbates the pathological outcome of experimental Escherichia coli infections in poultry
Kromann, Sofie, Kudirkiene, Egle, Li, Lili, Thoefner, Ida, Daldorph, Elisabeth, Christensen, Jens Peter, Meng, Hecheng, Olsen, Rikke Heidemann
Published in PloS one (11.10.2017)
Published in PloS one (11.10.2017)
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Journal Article
Whole Genome Sequence-Based Prediction of Resistance Determinants in High-Level Multidrug-Resistant Campylobacter jejuni Isolates in Lithuania
Aksomaitiene, Jurgita, Novoslavskij, Aleksandr, Kudirkiene, Egle, Gabinaitiene, Ausra, Malakauskas, Mindaugas
Published in Microorganisms (Basel) (29.12.2020)
Published in Microorganisms (Basel) (29.12.2020)
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Journal Article
The Use of a Combined Bioinformatics Approach to Locate Antibiotic Resistance Genes on Plasmids From Whole Genome Sequences of Salmonella enterica Serovars From Humans in Ghana
Kudirkiene, Egle, Andoh, Linda A, Ahmed, Shahana, Herrero-Fresno, Ana, Dalsgaard, Anders, Obiri-Danso, Kwasi, Olsen, John E
Published in Frontiers in microbiology (17.05.2018)
Published in Frontiers in microbiology (17.05.2018)
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Post-weaning diarrhea in pigs weaned without medicinal zinc: risk factors, pathogen dynamics, and association to growth rate
Eriksen, Esben Østergaard, Kudirkiene, Egle, Christensen, Anja Ejlersgård, Agerlin, Marianne Viuf, Weber, Nicolai Rosager, Nødtvedt, Ane, Nielsen, Jens Peter, Hartmann, Katrine Top, Skade, Lotte, Larsen, Lars Erik, Pankoke, Karen, Olsen, John Elmerdahl, Jensen, Henrik Elvang, Pedersen, Ken Steen
Published in Porcine Health Management. (09.10.2021)
Published in Porcine Health Management. (09.10.2021)
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Gastro-intestinal lesions are not relatable to diarrhoea or specific pathogens in post-weaning diarrhoea (PWD) in pigs
Blirup-Plum, Sophie Amalie, Jensen, Henrik Elvang, Nielsen, Søren Saxmose, Pankoke, Karen, Hansen, Mette Sif, Pedersen, Ken Steen, Eriksen, Esben Østergaard, Nielsen, Jens Peter, Olsen, John Elmerdahl, Kudirkiene, Egle, Larsen, Lars Erik, Goecke, Nicole Bakkegård, Barington, Kristiane
Published in Acta veterinaria scandinavica (03.07.2023)
Published in Acta veterinaria scandinavica (03.07.2023)
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Whole genome sequence comparison of avian pathogenic Escherichia coli from acute and chronic salpingitis of egg laying hens
Poulsen, Louise Ladefoged, Kudirkiene, Egle, Jørgensen, Steffen Lynge, Djordjevic, Steven Philip, Cummins, Max Laurence, Christensen, Jens Peter, Christensen, Henrik, Bisgaard, Magne, Thøfner, Ida
Published in BMC veterinary research (20.05.2020)
Published in BMC veterinary research (20.05.2020)
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Draft Genome Sequence of Ciprofloxacin and Ceftriaxone Resistant Campylobacter jejuni MM26-781 Assigned to Novel ST Isolated From Common Pigeon in Lithuania
Aksomaitiene, Jurgita, Ramonaite, Sigita, Novoslavskij, Aleksandr, Malakauskas, Mindaugas, Kudirkiene, Egle
Published in Evolutionary bioinformatics online (2019)
Published in Evolutionary bioinformatics online (2019)
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Chaperone-usher fimbriae in a diverse selection of Gallibacterium genomes
Kudirkienė, Eglė, Bager, Ragnhild J, Johnson, Timothy J, Bojesen, Anders M
Published in BMC genomics (12.12.2014)
Published in BMC genomics (12.12.2014)
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An observational field study of porcine post-weaning diarrhea: clinical and microbiological findings, and fecal pH-measurements as a potential diagnostic tool
Eriksen, Esben Østergaard, Kudirkiene, Egle, Barington, Kristiane, Goecke, Nicole Bakkegård, Blirup-Plum, Sophie Amalie, Nielsen, Jens Peter, Olsen, John Elmerdahl, Jensen, Henrik Elvang, Pankoke, Karen, Larsen, Lars Erik, Liu, Gang, Pedersen, Ken Steen
Published in Porcine Health Management. (11.07.2023)
Published in Porcine Health Management. (11.07.2023)
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Genomic Characterization of Arcobacter butzleri Strains Isolated from Various Sources in Lithuania
Uljanovas, Dainius, Gölz, Greta, Fleischmann, Susanne, Kudirkiene, Egle, Kasetiene, Neringa, Grineviciene, Audrone, Tamuleviciene, Egle, Aksomaitiene, Jurgita, Alter, Thomas, Malakauskas, Mindaugas
Published in Microorganisms (Basel) (28.05.2023)
Published in Microorganisms (Basel) (28.05.2023)
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Journal Article
Genetic diversity and antimicrobial resistance of Yersinia enterocolitica isolated from pigs and humans in Lithuania
Novoslavskij, Aleksandr, Kudirkienė, Eglė, Marcinkutė, Audronė, Bajoriūnienė, Almina, Korkeala, Hannu, Malakauskas, Mindaugas
Published in Journal of the science of food and agriculture (01.06.2013)
Published in Journal of the science of food and agriculture (01.06.2013)
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Evidence of broiler meat contamination with post-disinfection strains of Campylobacter jejuni from slaughterhouse
Kudirkienė, Eglė, Bunevičienė, Jurgita, Brøndsted, Lone, Ingmer, Hanne, Olsen, John Elmerdahl, Malakauskas, Mindaugas
Published in International journal of food microbiology (01.03.2011)
Published in International journal of food microbiology (01.03.2011)
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