A Placebo-controlled double-blinded test of the biodiversity hypothesis of immune-mediated diseases: Environmental microbial diversity elicits changes in cytokines and increase in T regulatory cells in young children
Roslund, Marja I., Parajuli, Anirudra, Hui, Nan, Puhakka, Riikka, Grönroos, Mira, Soininen, Laura, Nurminen, Noora, Oikarinen, Sami, Cinek, Ondřej, Kramná, Lenka, Schroderus, Anna-Mari, Laitinen, Olli H., Kinnunen, Tuure, Hyöty, Heikki, Sinkkonen, Aki, Cerrone, Damiano, Grönroos, Mira, Laitinen, Olli H., Luukkonen, Anna, Mäkelä, Iida, Nurminen, Noora, Oikarinen, Sami, Parajuli, Anirudra, Puhakka, Riikka, Roslund, Marja I., Saarenpää, Mika, Soininen, Laura, Rajaniemi, Juho, Hyöty, Heikki, Sinkkonen, Aki
Published in Ecotoxicology and environmental safety (01.09.2022)
Published in Ecotoxicology and environmental safety (01.09.2022)
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Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children
Roslund, Marja I, Puhakka, Riikka, Grönroos, Mira, Nurminen, Noora, Oikarinen, Sami, Gazali, Ahmad M, Cinek, Ondřej, Kramná, Lenka, Siter, Nathan, Vari, Heli K, Soininen, Laura, Parajuli, Anirudra, Rajaniemi, Juho, Kinnunen, Tuure, Laitinen, Olli H, Hyöty, Heikki, Sinkkonen, Aki
Published in Science advances (01.10.2020)
Published in Science advances (01.10.2020)
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Gut virome sequencing in children with early islet autoimmunity
Kramná, Lenka, Kolářová, Kateřina, Oikarinen, Sami, Pursiheimo, Juha-Pekka, Ilonen, Jorma, Simell, Olli, Knip, Mikael, Veijola, Riitta, Hyöty, Heikki, Cinek, Ondrej
Published in Diabetes care (01.05.2015)
Published in Diabetes care (01.05.2015)
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Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome
Cinek, Ondrej, Polackova, Katerina, Odeh, Rasha, Alassaf, Abeer, Kramná, Lenka, Ibekwe, MaryAnn Ugochi, Majaliwa, Edna Siima, Ahmadov, Gunduz, Elmahi, Bashir Mukhtar Elwasila, Mekki, Hanan, Oikarinen, Sami, Lebl, Jan, Abdullah, Mohammed Ahmed
Published in Parasites & vectors (12.08.2021)
Published in Parasites & vectors (12.08.2021)
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Journal Article
Parechovirus Infection in Early Childhood and Association With Subsequent Celiac Disease
Tapia, German, Chudá, Kateřina, Kahrs, Christian R, Stene, Lars C, Kramna, Lenka, Mårild, Karl, Rasmussen, Trond, Rønningen, Kjersti S, Cinek, Ondřej, Størdal, Ketil
Published in The American journal of gastroenterology (01.04.2021)
Published in The American journal of gastroenterology (01.04.2021)
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Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples
Lin, Jake, Kramna, Lenka, Autio, Reija, Hyöty, Heikki, Nykter, Matti, Cinek, Ondrej
Published in BMC genomics (15.05.2017)
Published in BMC genomics (15.05.2017)
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Journal Article
Gut microbiome diversity of porcine peritonitis model of sepsis
Chalupova, Miroslava, Horak, Jan, Kramna, Lenka, Nalos, Lukas, Stengl, Milan, Chudejova, Katerina, Kraftova, Lucie, Cinek, Ondrej, Klein, Pavel, Matejovic, Martin, Hrabak, Jaroslav
Published in Scientific reports (19.10.2022)
Published in Scientific reports (19.10.2022)
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Journal Article
Quantitative CrAssphage real‐time PCR assay derived from data of multiple geographically distant populations
Cinek, Ondrej, Mazankova, Karla, Kramna, Lenka, Odeh, Rasha, Alassaf, Abeer, Ibekwe, MaryAnn U., Ahmadov, Gunduz, Mekki, Hanan, Abdullah, Mohammed A., Elmahi, Bashir M. E., Hyöty, Heikki, Rainetova, Petra
Published in Journal of medical virology (01.04.2018)
Published in Journal of medical virology (01.04.2018)
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An effective combination of sanger and next generation sequencing in diagnostics of primary ciliary dyskinesia
Djakow, Jana, Kramná, Lenka, Dušátková, Lenka, Uhlík, Jiří, Pursiheimo, Juha-Pekka, Svobodová, Tamara, Pohunek, Petr, Cinek, Ondřej
Published in Pediatric pulmonology (01.05.2016)
Published in Pediatric pulmonology (01.05.2016)
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Journal Article
Skin, gut, and sand metagenomic data on placebo-controlled sandbox biodiversity intervention study
Roslund, Marja I., Parajuli, Anirudra, Hui, Nan, Puhakka, Riikka, Grönroos, Mira, Soininen, Laura, Nurminen, Noora, Oikarinen, Sami, Cinek, Ondřej, Kramná, Lenka, Schroderus, Anna-Mari, Laitinen, Olli H., Kinnunen, Tuure, Hyöty, Heikki, Sinkkonen, Aki
Published in Data in brief (01.04.2023)
Published in Data in brief (01.04.2023)
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Protocol for faecal microbiota transplantation in irritable bowel syndrome: the MISCEAT study – a randomised, double-blind cross-over study using mixed microbiota from healthy donors
Hurych, Jakub, Vejmelka, Jiri, Hlinakova, Lucie, Kramna, Lenka, Larionov, Vladyslav, Kulich, Michal, Cinek, Ondrej, Kohout, Pavel
Published in BMJ open (01.06.2022)
Published in BMJ open (01.06.2022)
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Journal Article
Changes in the lung bacteriome in relation to antipseudomonal therapy in children with cystic fibrosis
Kramná, Lenka, Dřevínek, Pavel, Lin, Jake, Kulich, Michal, Cinek, Ondrej
Published in Folia microbiologica (01.03.2018)
Published in Folia microbiologica (01.03.2018)
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Journal Article
Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media
Sillanpää, Saara, Kramna, Lenka, Oikarinen, Sami, Sipilä, Markku, Rautiainen, Markus, Aittoniemi, Janne, Laranne, Jussi, Hyöty, Heikki, Cinek, Ondrej
Published in mSphere (01.03.2017)
Published in mSphere (01.03.2017)
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Journal Article
Enterovirus RNA in peripheral blood may be associated with the variants of rs1990760, a common type 1 diabetes associated polymorphism in IFIH1
Cinek, Ondrej, Tapia, German, Witsø, Elisabet, Kramna, Lenka, Holkova, Katerina, Rasmussen, Trond, Stene, Lars C, Rønningen, Kjersti S
Published in PloS one (07.11.2012)
Published in PloS one (07.11.2012)
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Journal Article
Long-term biodiversity intervention shapes health-associated commensal microbiota among urban day-care children
Roslund, Marja I., Puhakka, Riikka, Puhakka, Riikka, Nurminen, Noora, Oikarinen, Sami, Siter, Nathan, Grönroos, Mira, Grönroos, Mira, Cinek, Ondřej, Kramná, Lenka, Jumpponen, Ari, Laitinen, Olli H., Rajaniemi, Juho, Hyöty, Heikki, Sinkkonen, Aki, Cerrone, Damiano, Hui, Nan, Mäkelä, Iida, Nurminen, Noora, Oikarinen, Sami, Parajuli, Anirudra, Saarenpää, Mika, Soininen, Laura, Sun, Yan, Vari, Heli K., Laitinen, Olli H., Rajaniemi, Juho, Hyöty, Heikki, Sinkkonen, Aki
Published in Environment international (01.12.2021)
Published in Environment international (01.12.2021)
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Coxsackievirus B4 sewage-isolate induces pancreatitis after oral infection of mice
Benkoova, Brigita, Pospisilova, Michaela, Kramna, Lenka, Kissova, Renata, Berakova, Katarina, Klement, Cyril, Cinek, Ondrej, Bopegamage, Shubhada
Published in FEMS microbiology letters (01.08.2021)
Published in FEMS microbiology letters (01.08.2021)
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Journal Article
Human gut microbiota transferred to germ-free NOD mice modulate the progression towards type 1 diabetes regardless of the pace of beta cell function loss in the donor
Neuman, Vit, Cinek, Ondrej, Funda, David P., Hudcovic, Tomas, Golias, Jaroslav, Kramna, Lenka, Petruzelkova, Lenka, Pruhova, Stepanka, Sumnik, Zdenek
Published in Diabetologia (01.07.2019)
Published in Diabetologia (01.07.2019)
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Enterovirus as trigger of coeliac disease: nested case-control study within prospective birth cohort
Kahrs, Christian R, Chuda, Katerina, Tapia, German, Stene, Lars C, Mårild, Karl, Rasmussen, Trond, Rønningen, Kjersti S, Lundin, Knut E A, Kramna, Lenka, Cinek, Ondrej, Størdal, Ketil
Published in BMJ (Online) (13.02.2019)
Published in BMJ (Online) (13.02.2019)
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Journal Article
Yard vegetation is associated with gut microbiota composition
Parajuli, Anirudra, Hui, Nan, Puhakka, Riikka, Oikarinen, Sami, Grönroos, Mira, Selonen, Ville A.O., Siter, Nathan, Kramna, Lenka, Roslund, Marja I., Vari, Heli K., Nurminen, Noora, Honkanen, Hanna, Hintikka, Jukka, Sarkkinen, Hannu, Romantschuk, Martin, Kauppi, Markku, Valve, Raisa, Cinek, Ondřej, Laitinen, Olli H., Rajaniemi, Juho, Hyöty, Heikki, Sinkkonen, Aki
Published in The Science of the total environment (15.04.2020)
Published in The Science of the total environment (15.04.2020)
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