Clinical and Biological Subtypes of B-cell Lymphoma Revealed by Microenvironmental Signatures
Kotlov, Nikita, Bagaev, Alexander, Revuelta, Maria V, Phillip, Jude M, Cacciapuoti, Maria Teresa, Antysheva, Zoya, Svekolkin, Viktor, Tikhonova, Ekaterina, Miheecheva, Natalia, Kuzkina, Natalia, Nos, Grigorii, Tabbo, Fabrizio, Frenkel, Felix, Ghione, Paola, Tsiper, Maria, Almog, Nava, Fowler, Nathan, Melnick, Ari M, Leonard, John P, Inghirami, Giorgio, Cerchietti, Leandro
Published in Cancer discovery (01.06.2021)
Published in Cancer discovery (01.06.2021)
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Compromised counterselection by FAS creates an aggressive subtype of germinal center lymphoma
Razzaghi, Raud, Agarwal, Shreya, Kotlov, Nikita, Plotnikova, Olga, Nomie, Krystle, Huang, Da Wei, Wright, George W, Smith, Grace A, Li, Moyi, Takata, Katsuyoshi, Yamadi, Maryam, Yao, Chen, O'Shea, John J, Phelan, James D, Pittaluga, Stefania, Scott, David W, Muppidi, Jagan R
Published in The Journal of experimental medicine (01.03.2021)
Published in The Journal of experimental medicine (01.03.2021)
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Immune-depleted tumor microenvironment is associated with poor outcomes and BTK inhibitor resistance in mantle cell lymphoma
Jain, Preetesh, Nomie, Krystle, Kotlov, Nikita, Segodin, VitaIy, Hill, Holly, Ok, Chi Young, Fetooh, Ahmed, Kanagal-Shamanna, Rashmi, Vega, Francisco, Bagaev, Alexander, Fowler, Nathan, Flowers, Christopher R, Wang, Michael
Published in Blood cancer journal (New York) (12.10.2023)
Published in Blood cancer journal (New York) (12.10.2023)
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Microenvironmental Signatures Reveal Biological Subtypes of Diffuse Large B-Cell Lymphoma (DLBCL) Distinct from Tumor Cell Molecular Profiling
Cerchietti, Leandro, Inghirami, Giorgio, Kotlov, Nikita, Svekolkin, Viktor, Bagaev, Alexander, Frenkel, Felix, Revuelta, Maria Victoria, Phillip, Jude M, Cacciapuoti, Maria Teresa, Rutherford, Sarah C., Martin, Peter, Leonard, John P.
Published in Blood (13.11.2019)
Published in Blood (13.11.2019)
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Doublecortin-Like Kinase 1 (DCLK1) Is a Novel NOTCH Pathway Signaling Regulator in Head and Neck Squamous Cell Carcinoma
Broner, Esther C, Trujillo, Jonathan A, Korzinkin, Michael, Subbannayya, Tejaswini, Agrawal, Nishant, Ozerov, Ivan V, Zhavoronkov, Alex, Rooper, Lisa, Kotlov, Nikita, Shen, Le, Pearson, Alexander T, Rosenberg, Ari J, Savage, Peter A, Mishra, Vasudha, Chatterjee, Aditi, Sidransky, David, Izumchenko, Evgeny
Published in Frontiers in oncology (16.07.2021)
Published in Frontiers in oncology (16.07.2021)
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Deciphering the origin and therapeutic targets of cancer of unknown primary: a case report that illustrates the power of integrative whole-exome and transcriptome sequencing analysis
Al Assaad, Majd, Shin, Nara, Sigouros, Michael, Manohar, Jyothi, Antysheva, Zoia, Kotlov, Nikita, Kiriy, Daria, Nikitina, Anastasiia, Kleimenov, Mikhail, Tsareva, Anastasiya, Makarova, Anastasiya, Fomchenkova, Victoria, Dubinina, Julia, Boyko, Alexandra, Almog, Nava, Wilkes, David, Escalon, Joanna G, Saxena, Ashish, Elemento, Olivier, Sternberg, Cora N, Nanus, David M, Mosquera, Juan Miguel
Published in Frontiers in oncology (22.01.2024)
Published in Frontiers in oncology (22.01.2024)
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532 A cross-cohort examination of factors impacting immunotherapy survival in non-small cell lung cancer (NSCLC)
Danilov, Konstantin, Bansal, Dhruv, Valiev, Ivan, Kushnarev, Vladimir, Ward, Chris, Al-Obaidi, Ammar, Pluard, Timothy, Tarasov, Artem, Makarova, Anastasiia, Butusova, Anna, Love, Anna, Nomie, Krystle, Kotlov, Nikita, Subramanian, Janakiraman, Bagaev, Alexander
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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555 Challenges in predicting ICI response in HPV+ HNSCC: insights into the tumor microenvironment
Nikitina, Anastasiia, Sobol, Anastasia, Alekseeva, Evgeniia, Tyshevich, Andrey, Love, Anna, Luginbuhl, Adam J, Linnenbach, Alban J, Curry, Joseph M, Kushnarev, Vladimir, Davitt, Christopher JH, Kotlov, Nikita, Bagaev, Alexander, Fowler, Nathan
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Procrustes is a machine-learning approach that removes cross-platform batch effects from clinical RNA sequencing data
Kotlov, Nikita, Shaposhnikov, Kirill, Tazearslan, Cagdas, Chasse, Madison, Baisangurov, Artur, Podsvirova, Svetlana, Fernandez, Dawn, Abdou, Mary, Kaneunyenye, Leznath, Morgan, Kelley, Cheremushkin, Ilya, Zemskiy, Pavel, Chelushkin, Maxim, Sorokina, Maria, Belova, Ekaterina, Khorkova, Svetlana, Lozinsky, Yaroslav, Nuzhdina, Katerina, Vasileva, Elena, Kravchenko, Dmitry, Suryamohan, Kushal, Nomie, Krystle, Curran, John, Fowler, Nathan, Bagaev, Alexander
Published in Communications biology (30.03.2024)
Published in Communications biology (30.03.2024)
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P1205: A LIVING PATIENT‐DERIVED BIOREPOSITORY FOSTERING MICROENVIRONMENT DISSECTION IN T‐CELL LYMPHOMA
Fiore, Danilo, Vincenzo Cappelli, Luca, Zhaoqi, Liu, Kotlov, Nikita, Sorokina, Maria, Phillip, Jude, Zumbo, Paul, Yoffe, Liron, Xueshuai, Han, Pignataro, Claudia, Ghione, Paola, Fragliasso, Valentina, Condorelli, Gerolama, Foà, Robin, Brody, Joshua, Betel, Doron, Chan, Wing C, Tam, Wayne, Nikitina, Anastasie, Bagaev, Aleksander, Fowler, Nathan, Weinstock, David, Cerchietti, Leandro, Rabadan, Raul, Horwitz, Steve, Inghirami, Giorgio
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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S235: GENERATION AND APPLICATION OF A LIVING T‐CELL LYMPHOMA PATIENT‐DERIVED TUMOR XENOGRAFT BIOREPOSITORY
Cappelli, Luca Vincenzo, Fiore, Danilo, Zhaoqi, Liu, Kotlov, Nikita, Phillip, Jude, Zumbo, Paul, Yoffe, Liron, Pignataro, Claudia, Ghione, Paola, Xueshuai, Han, Fragliasso, Valentina, Condorelli, Gerolama, Foà, Robin, Brody, Joshua, Betel, Doron, Chan, John, Tam, Wayne, Weinstock, David, Cerchietti, Leandro, Rabadan, Raul, Horwitz, Steven, Inghirami, Giorgio
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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B-Cell Infiltrate in the Tumor Microenvironment Is Associated With Improved Survival in Resected Lung Adenocarcinoma
Dagogo-Jack, Ibiayi, Valiev, Ivan, Kotlov, Nikita, Belozerova, Anna, Lopareva, Aleksandra, Butusova, Anna, Samarina, Naira, Boyko, Alexandra, Xiang, Zhongmin, Johnson, Monique, Degryse, Sandrine, Keane, Florence K., Sequist, Lecia V., Lanuti, Michael, Fowler, Nathan, Mino-Kenudson, Mari, Bagaev, Alexander
Published in JTO clinical and research reports (01.07.2023)
Published in JTO clinical and research reports (01.07.2023)
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A new species of Cyanea jellyfish sympatric to C. capillata in the White Sea
Kolbasova, Glafira D., Zalevsky, Arthur O., Gafurov, Azamat R., Gusev, Philipp O., Ezhova, Margarita A., Zheludkevich, Anna A., Konovalova, Olga P., Kosobokova, Ksenia N., Kotlov, Nikita U., Lanina, Natalia O., Lapashina, Anna S., Medvedev, Dmitry O., Nosikova, Katerina S., Nuzhdina, Ekaterina O., Bazykin, Georgii A., Neretina, Tatyana V.
Published in Polar biology (01.09.2015)
Published in Polar biology (01.09.2015)
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Conserved pan-cancer microenvironment subtypes predict response to immunotherapy
Bagaev, Alexander, Kotlov, Nikita, Nomie, Krystle, Svekolkin, Viktor, Gafurov, Azamat, Isaeva, Olga, Osokin, Nikita, Kozlov, Ivan, Frenkel, Felix, Gancharova, Olga, Almog, Nava, Tsiper, Maria, Ataullakhanov, Ravshan, Fowler, Nathan
Published in Cancer cell (14.06.2021)
Published in Cancer cell (14.06.2021)
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A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications
Wright, George W., Huang, Da Wei, Phelan, James D., Coulibaly, Zana A., Roulland, Sandrine, Young, Ryan M., Wang, James Q., Schmitz, Roland, Morin, Ryan D., Tang, Jeffrey, Jiang, Aixiang, Bagaev, Aleksander, Plotnikova, Olga, Kotlov, Nikita, Johnson, Calvin A., Wilson, Wyndham H., Scott, David W., Staudt, Louis M.
Published in Cancer cell (13.04.2020)
Published in Cancer cell (13.04.2020)
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Abstract 4418: Integrated whole exome and transcriptome analyses of the tumor and microenvironment provide new opportunities for rational design of cancer therapy
Bagaev, Alexander, Kotlov, Nikita, Frenkel, Felix, Svekolkin, Viktor, Almog, Nava, Ataullakhanov, Ravshan, Fowler, Nathan
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Tumor immunity portrait: An AI-driven molecular predictor combining tumor microenvironment and tumor mutational burden for immune checkpoint inhibitor response prediction
Shilo, Polina, Tarasov, Artem, Filatova, Anna, Danilov, Konstantin, Valiev, Ivan, Kotlov, Nikita, Brown, Jessica H., Ogloblina, Anna, Bagaev, Alexander, Fowler, Nathan
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Genomic characterization of the GATA3 mutational landscape in breast cancer
Mouabbi, Jason A, Meric-Bernstam, Funda, Turova, Polina, Chernyshov, Konstantin, Kushnarev, Vladimir, Kotlov, Nikita, Brown, Jessica H., Clayton, Patrick, Nomie, Krystle, Fowler, Nathan, Tripathy, Debu, Damodaran, Senthil
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Aggregated analysis of 1,000 patients with cancer to assess the benefits of integrated whole exome and whole transcriptome sequencing
Chernyshov, Konstantin, Love, Anna, Senichkin, Viacheslav, Sagaradze, Georgy, Rumyantsev, Konstantin, Kushnarev, Vladimir, Postovalova, Ekaterina, Kotlov, Nikita, Ogloblina, Anna, Bagaev, Alexander, Fowler, Nathan
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Journal Article
Differential genomic and transcriptomic analysis of invasive lobular and ductal carcinomas
Mouabbi, Jason A, Meric-Bernstam, Funda, Khorkova, Svetlana, Turova, Polina, Kotlov, Nikita, Chernyshov, Konstantin, Kushnarev, Vladimir, Love, Anna, Clayton, Patrick, Nomie, Krystle, Fowler, Nathan, Tripathy, Debu
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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