The MetaCyc database of metabolic pathways and enzymes - a 2019 update
Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes
Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
The BioCyc collection of microbial genomes and metabolic pathways
Karp, Peter D, Billington, Richard, Caspi, Ron, Fulcher, Carol A, Latendresse, Mario, Kothari, Anamika, Keseler, Ingrid M, Krummenacker, Markus, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne M, Subhraveti, Pallavi
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Karp, Peter D
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A, Holland, Timothy A, Keseler, Ingrid M, Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
The EcoCyc Database in 2021
Keseler, Ingrid M, Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H, Wolfe, Alan J, Collado-Vides, Julio, Paulsen, Ian T, Karp, Peter D
Published in Frontiers in microbiology (28.07.2021)
Published in Frontiers in microbiology (28.07.2021)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Caspi, Ron, Altman, Tomer, Dale, Joseph M, Dreher, Kate, Fulcher, Carol A, Gilham, Fred, Kaipa, Pallavi, Karthikeyan, Athikkattuvalasu S, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Paley, Suzanne, Popescu, Liviu, Pujar, Anuradha, Shearer, Alexander G, Zhang, Peifen, Karp, Peter D
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
Computational Metabolomics Operations at BioCyc.org
Karp, Peter D, Billington, Richard, Holland, Timothy A, Kothari, Anamika, Krummenacker, Markus, Weaver, Daniel, Latendresse, Mario, Paley, Suzanne
Published in Metabolites (22.05.2015)
Published in Metabolites (22.05.2015)
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Journal Article
A systematic comparison of the MetaCyc and KEGG pathway databases
Altman, Tomer, Travers, Michael, Kothari, Anamika, Caspi, Ron, Karp, Peter D
Published in BMC bioinformatics (27.03.2013)
Published in BMC bioinformatics (27.03.2013)
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Journal Article
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
Keseler, Ingrid M, Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A, Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
Karp, Peter D, Midford, Peter E, Billington, Richard, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Ong, Wai Kit, Subhraveti, Pallavi, Caspi, Ron, Fulcher, Carol, Keseler, Ingrid M, Paley, Suzanne M
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Journal Article
EcoCyc: fusing model organism databases with systems biology
Keseler, Ingrid M, Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G, Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P, Paulsen, Ian, Karp, Peter D
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
Karp, Peter D, Latendresse, Mario, Paley, Suzanne M, Krummenacker, Markus, Ong, Quang D, Billington, Richard, Kothari, Anamika, Weaver, Daniel, Lee, Thomas, Subhraveti, Pallavi, Spaulding, Aaron, Fulcher, Carol, Keseler, Ingrid M, Caspi, Ron
Published in Briefings in bioinformatics (01.09.2016)
Published in Briefings in bioinformatics (01.09.2016)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Caspi, Ron, Altman, Tomer, Dreher, Kate, Fulcher, Carol A., Subhraveti, Pallavi, Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Pujar, Anuradha, Shearer, Alexander G., Travers, Michael, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
The EcoCyc Database
Karp, Peter D, Ong, Wai Kit, Paley, Suzanne, Billington, Richard, Caspi, Ron, Fulcher, Carol, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Subhraveti, Pallavi, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Santos-Zavaleta, Alberto, Mackie, Amanda, Collado-Vides, Julio, Keseler, Ingrid M, Paulsen, Ian
Published in Ecosal plus (01.11.2018)
Published in Ecosal plus (01.11.2018)
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A machine learning-based approach to determine infection status in recipients of BBV152 (Covaxin) whole-virion inactivated SARS-CoV-2 vaccine for serological surveys
Singh, Prateek, Prakash, Satyartha, Naushin, Salwa, Sardana, Viren, Bhatheja, Nitin, Singh, Ajay Pratap, Kumar, Kartik, Gayali, Saurabh, Khan, Raju, Rawat, Birendra Singh, Tallapaka, Karthik Bharadwaj, Kar, Susanta, Bhosale, Vivek, Srivastava, Mrigank, Mugale, Madhav Nilakanth, Katiyar, Shivani, Ishteyaque, Sharmeen, Khanka, Sonu, Rani, Ankita, Promila, Sharma, Jyotsna, Dutta, Mukul, Saurabh, Nishant, Bansal, Deepak, Halami, Prakash M., Peddha, Muthukumar Serva, Veeranna, Ravindra P., Pal, Anirban, Anandasadagopan, Suresh Kumar, Karuppanan, Parimala, Rahman, Syed Nasar, Selvakumar, Gopika, Venkatesan, Subramanian, Karmakar, Malay Kumar, Sardana, Harish Kumar, Kothari, Anamika, Thakur, Anupma, Saifi, Anas, Gupta, Naman, Singh, Yogita, Reddu, Ritu, Gautam, Rizul, Mishra, Anuj, Mishra, Avinash, Padwad, Yogendra, Patial, Vikram, Hallan, Vipin, Singh, Damanpreet, Tirpude, Narendra, Maity, Sujay Krishna, Sistla, Ramakrishna, A, Kiran Kumar, Kumar, B. Vijay, Jamwal, Piyush Singh, Wali, Anshu, Chouhan, Rekha, Sharma, Nancy, Rai, Garima, Irshad, Faisal, Jamwal, Vijay Lakshmi, Khan, Sameer Ullah, Malik, Fayaz, Ghosh, Debashish, Barik, S.K., Satija, Yatendra Kumar, Khan, Md. Tauseef, Kumar, Rashmi, Bhardwaj, Anshu, Sharma, Deepak, Ray chaudhuri, Saumya, Prakash, L., Likhitkar, Bhagyashree, Mohite, Sharada, Patil, Yogita, Kulkarni, Mahesh, Patil, Amita, Samson, Rachel, Vare, Tejas, Dharne, Mahesh, Giri, Ashok, Sastry, G. Narahari, Kalita, Jatin, Phukan, Tridip, Romi, Wahengbam, Bharali, Pankaj, Sahu, Ravi Kumar, Dutta, Prachurjya, Singh, Moirangthem Goutam, Gogoi, Gayatri, Tapadar, Yasmin Begam, Babu, Elapavalooru VSSK, Sukumaran, Rajeev K., Nair, Aishwarya R., Puthiyamadam, Anoop, Valappil, Prajeesh Kooloth, Pillai Prasannakumari, Adrash Velayudhan, Chodankar, Kalpana, Agrawal, Ved Varun, Agrawal, Anurag, Dash, Debasis
Published in Computers in biology and medicine (01.07.2022)
Published in Computers in biology and medicine (01.07.2022)
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Insights from a Pan India Sero-Epidemiological survey (Phenome-India Cohort) for SARS-CoV2
Naushin, Salwa, Bhaskar, Akash Kumar, Pradhan, Shalini, Khan, Raju, Rawat, Birendra Singh, Anumalla, Mahesh, Chandak, Giriraj Ratan, Lahiri, Amit, Kar, Susanta, Mulay, Shrikant Ramesh, Srivastava, Mrigank, Srivastava, Anjali, Tomar, Bhawana, Veerapandian, Murugan, Venkatachalam, Ganesh, Vijayakumar, Selvamani Raja, Agarwal, Ajay, Gupta, Dinesh, Halami, Prakash M, Sundaram, Gopinath M, Pal, Anirban, Agarwal, Vinay Kumar, Singh, Ranvijay Kumar, Raman, Ashok Kumar, Anandasadagopan, Suresh Kumar, Karuppanan, Parimala, Sardana, Harish Kumar, Kothari, Anamika, Thakur, Anupama, Parihar, Devendra Singh, Saifi, Anas, Kaur, Jasleen, Kumar, Virendra, Rayasam, Geethavani, Chakraborty, Rahul, Karunakar, Pinreddy, Singhmar, Sunanda, Singh, Dayanidhi, Sarkar, Sharmistha, Acharya, Sundaram, Verma, Shweta, Seth, Surabhi, Vashisht, Sakshi, Thakran, Sarita, Fatima, Firdaus, Singh, Akash Pratap, Sharma, Akanksha, Subramanian, Manikandan, Padwad, Yogendra S, Hallan, Vipin, Patial, Vikram, Tripude, Narendra Vijay, Chakrabarti, Partha, Maity, Sujay Krishna, Ganguly, Dipyaman, Ramakrishna, Sistla, Kumar, Balthu Narender, Kumar, Kiran A, Gandhi, Sumit G, Jamwal, Piyush Singh, Chouhan, Rekha, Kapoor, Nitika, Ghosh, Debashish, Thakkar, Ghanshyam, Subudhi, Umakanta, Sen, Pradip, Chaudhury, Saumya Ray, Kumar, Rashmi, Gupta, Pawan, Tuli, Amit, Sharma, Deepak, D, Amarnarayan, Kulkarni, Mahesh, Shanmugam, Dhansekaran, Dharne, Mahesh S, Joshi, Rakesh, Patil, Amita P, Mahajan, Sachin N, Khan, Abujunaid Habib, Wagh, Vasudev, Yadav, Rakesh Kumar, Khilari, Ajinkya, Bhadange, Mayuri, Chaurasiya, Arvindkumar H, Khairnar, Krishna, Paranjape, Shilpa, Manna, Prasenjit, Romi, Wahengbam, Bharali, Pankaj, Sahu, Ravi Kumar, Babu, Elapavalooru Vssk, Nair, Aiswarya R, Puthiyamadam, Anoop, Velayudhanpillai, Adarsh, Chodankar, Kalpana, Damare, Samir, Aggarwal, Ved Varun, Dahiya, Sumit, Agrawal, Anurag, Dash, Debasis
Published in eLife (20.04.2021)
Published in eLife (20.04.2021)
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Journal Article
The EcoCyc Database (2023)
Karp, Peter D, Paley, Suzanne, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Moore, Lisa R, Subhraveti, Pallavi, Gama-Castro, Socorro, Tierrafria, Victor H, Lara, Paloma, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Santos-Zavaleta, Alberto, Mackie, Amanda, Sun, Gwanggyu, Ahn-Horst, Travis A, Choi, Heejo, Covert, Markus W, Collado-Vides, Julio, Paulsen, Ian
Published in Ecosal plus (12.12.2023)
Published in Ecosal plus (12.12.2023)
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Journal Article
The EcoCyc Database
Karp, Peter D, Weaver, Daniel, Paley, Suzanne, Fulcher, Carol, Kubo, Aya, Kothari, Anamika, Krummenacker, Markus, Subhraveti, Pallavi, Weerasinghe, Deepika, Gama-Castro, Socorro, Huerta, Araceli M, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Weiss, Verena, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Schröder, Imke, Mackie, Amanda, Gunsalus, Robert, Collado-Vides, Julio, Keseler, Ingrid M, Paulsen, Ian
Published in Ecosal plus (01.05.2014)
Published in Ecosal plus (01.05.2014)
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