Myofibril breakdown during atrophy is a delayed response requiring the transcription factor PAX4 and desmin depolymerization
Volodin, Alexandra, Kosti, Idit, Goldberg, Alfred Lewis, Cohen, Shenhav
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2017)
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Journal Article
Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Le, Brian L., Andreoletti, Gaia, Oskotsky, Tomiko, Vallejo-Gracia, Albert, Rosales, Romel, Yu, Katharine, Kosti, Idit, Leon, Kristoffer E., Bunis, Daniel G., Li, Christine, Kumar, G. Renuka, White, Kris M., García-Sastre, Adolfo, Ott, Melanie, Sirota, Marina
Published in Scientific reports (10.06.2021)
Published in Scientific reports (10.06.2021)
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Journal Article
Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth
Kosti, Idit, Lyalina, Svetlana, Pollard, Katherine S, Butte, Atul J, Sirota, Marina
Published in Frontiers in microbiology (08.04.2020)
Published in Frontiers in microbiology (08.04.2020)
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Journal Article
Drugs in COVID-19 Clinical Trials: Predicting Transporter-Mediated Drug-Drug Interactions Using In Vitro Assays and Real-World Data
Yee, Sook Wah, Vora, Bianca, Oskotsky, Tomiko, Zou, Ling, Jakobsen, Sebastian, Enogieru, Osatohanmwen J, Koleske, Megan L, Kosti, Idit, Rödin, Mattias, Sirota, Marina, Giacomini, Kathleen M
Published in Clinical pharmacology and therapeutics (01.07.2021)
Published in Clinical pharmacology and therapeutics (01.07.2021)
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Journal Article
RBPmap: a web server for mapping binding sites of RNA-binding proteins
Paz, Inbal, Kosti, Idit, Ares, Manuel, Cline, Melissa, Mandel-Gutfreund, Yael
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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Journal Article
Whole-Tissue Deconvolution and scRNAseq Analysis Identify Altered Endometrial Cellular Compositions and Functionality Associated With Endometriosis
Bunis, Daniel G, Wang, Wanxin, Vallvé-Juanico, Júlia, Houshdaran, Sahar, Sen, Sushmita, Ben Soltane, Isam, Kosti, Idit, Vo, Kim Chi, Irwin, Juan C, Giudice, Linda C, Sirota, Marina
Published in Frontiers in immunology (05.01.2022)
Published in Frontiers in immunology (05.01.2022)
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Journal Article
Meta-Analysis of Maternal and Fetal Transcriptomic Data Elucidates the Role of Adaptive and Innate Immunity in Preterm Birth
Vora, Bianca, Wang, Aolin, Kosti, Idit, Huang, Hongtai, Paranjpe, Ishan, Woodruff, Tracey J, MacKenzie, Tippi, Sirota, Marina
Published in Frontiers in immunology (09.05.2018)
Published in Frontiers in immunology (09.05.2018)
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Journal Article
Dense phenotyping from electronic health records enables machine learning-based prediction of preterm birth
Abraham, Abin, Le, Brian, Kosti, Idit, Straub, Peter, Velez-Edwards, Digna R, Davis, Lea K, Newton, J M, Muglia, Louis J, Rokas, Antonis, Bejan, Cosmin A, Sirota, Marina, Capra, John A
Published in BMC medicine (28.09.2022)
Published in BMC medicine (28.09.2022)
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Journal Article
Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients
Sperry, Megan M, Oskotsky, Tomiko T, Marić, Ivana, Kaushal, Shruti, Takeda, Takako, Horvath, Viktor, Powers, Rani K, Rodas, Melissa, Furlong, Brooke, Soong, Mercy, Prabhala, Pranav, Goyal, Girija, Carlson, Kenneth E, Wong, Ronald J, Kosti, Idit, Le, Brian L, Logue, James, Hammond, Holly, Frieman, Matthew, Stevenson, David K, Ingber, Donald E, Sirota, Marina, Novak, Richard
Published in PLoS computational biology (01.05.2023)
Published in PLoS computational biology (01.05.2023)
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Journal Article
Comparative analysis of fungal protein kinases and associated domains
Kosti, Idit, Mandel-Gutfreund, Yael, Glaser, Fabian, Horwitz, Benjamin A
Published in BMC genomics (24.02.2010)
Published in BMC genomics (24.02.2010)
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Journal Article
Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US
Marić, Ivana, Oskotsky, Tomiko, Kosti, Idit, Le, Brian, Wong, Ronald J, Shaw, Gary M, Sirota, Marina, Stevenson, David K
Published in Frontiers in medicine (03.02.2021)
Published in Frontiers in medicine (03.02.2021)
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Journal Article
Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches
Edwards, Nathan C, Hing, Zachary A, Perry, Avital, Blaisdell, Adam, Kopelman, David B, Fathke, Robert, Plum, William, Newell, Jordan, Allen, Courtni E, S, Geetha, Shapiro, Aaron, Okunji, Chinyere, Kosti, Idit, Shomron, Noam, Grigoryan, Vahan, Przytycka, Teresa M, Sauna, Zuben E, Salari, Raheleh, Mandel-Gutfreund, Yael, Komar, Anton A, Kimchi-Sarfaty, Chava
Published in PloS one (29.06.2012)
Published in PloS one (29.06.2012)
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Journal Article
Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma
Sharpnack, Michael F., Chen, Bin, Aran, Dvir, Kosti, Idit, Sharpnack, Douglas D., Carbone, David P., Mallick, Parag, Huang, Kun
Published in EBioMedicine (01.01.2018)
Published in EBioMedicine (01.01.2018)
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Journal Article
Proteomic profiles of cytokines and chemokines in moderate to severe depression: Implications for comorbidities and biomarker discovery
Watson, Kathleen T., Keller, Jennifer, Spiro, Caleb M., Satz, Isaac B., Goncalves, Samantha V., Pankow, Heather, Chang, Maureen, Kosti, Idit, Sequeira, Adolfo, Bunney, William E., Rasgon, Natalie L., Schatzberg, Alan F., Lehallier, Benoit
Published in Brain, behavior, & immunity. Health (01.03.2024)
Published in Brain, behavior, & immunity. Health (01.03.2024)
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Journal Article
Global endometrial DNA methylation analysis reveals insights into mQTL regulation and associated endometriosis disease risk and endometrial function
Mortlock, Sally, Houshdaran, Sahar, Kosti, Idit, Rahmioglu, Nilufer, Nezhat, Camran, Vitonis, Allison F., Andrews, Shan V., Grosjean, Parker, Paranjpe, Manish, Horne, Andrew W., Jacoby, Alison, Lager, Jeannette, Opoku-Anane, Jessica, Vo, Kim Chi, Manvelyan, Evelina, Sen, Sushmita, Ghukasyan, Zhanna, Collins, Frances, Santamaria, Xavier, Saunders, Philippa, Kober, Kord, McRae, Allan F., Terry, Kathryn L., Vallvé-Juanico, Júlia, Becker, Christian, Rogers, Peter A. W., Irwin, Juan C., Zondervan, Krina, Montgomery, Grant W., Missmer, Stacey, Sirota, Marina, Giudice, Linda
Published in Communications biology (16.08.2023)
Published in Communications biology (16.08.2023)
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Journal Article
Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach
Oskotsky, Tomiko T., Bhoja, Arohee, Bunis, Daniel, Le, Brian L., Tang, Alice S., Kosti, Idit, Li, Christine, Houshdaran, Sahar, Sen, Sushmita, Vallvé-Juanico, Júlia, Wang, Wanxin, Arthurs, Erin, Govil, Arpita, Mahoney, Lauren, Lang, Lindsey, Gaudilliere, Brice, Stevenson, David K., Irwin, Juan C., Giudice, Linda C., McAllister, Stacy L., Sirota, Marina
Published in iScience (19.04.2024)
Published in iScience (19.04.2024)
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Journal Article
RBPmap: a web server for mapping binding sites of RNA-binding proteins
Paz, Inbal, Kosti, Idit, Ares, Jr, Manuel, Cline, Melissa, Mandel-Gutfreund, Yael
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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Journal Article
Electronic Medical Records Enable Precision Medicine Approaches for Celiac Disease
Kosti, Idit, Sirota, Marina
Published in Journal of pediatric gastroenterology and nutrition (01.10.2018)
Published in Journal of pediatric gastroenterology and nutrition (01.10.2018)
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Journal Article
Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues
Kosti, Idit, Jain, Nishant, Aran, Dvir, Butte, Atul J., Sirota, Marina
Published in Scientific reports (04.05.2016)
Published in Scientific reports (04.05.2016)
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Journal Article