Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein
Subach, Oksana M, Sotskov, Vladimir P, Plusnin, Viktor V, Gruzdeva, Anna M, Barykina, Natalia V, Ivashkina, Olga I, Anokhin, Konstantin V, Nikolaeva, Alena Y, Korzhenevskiy, Dmitry A, Vlaskina, Anna V, Lazarenko, Vladimir A, Boyko, Konstantin M, Rakitina, Tatiana V, Varizhuk, Anna M, Pozmogova, Galina E, Podgorny, Oleg V, Piatkevich, Kiryl D, Boyden, Edward S, Subach, Fedor V
Published in International journal of molecular sciences (28.02.2020)
Published in International journal of molecular sciences (28.02.2020)
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Comparison of histone-like HU protein DNA-binding properties and HU/IHF protein sequence alignment
Kamashev, Dmitri, Agapova, Yulia, Rastorguev, Sergey, Talyzina, Anna A, Boyko, Konstantin M, Korzhenevskiy, Dmitry A, Vlaskina, Anna, Vasilov, Raif, Timofeev, Vladimir I, Rakitina, Tatiana V
Published in PloS one (13.11.2017)
Published in PloS one (13.11.2017)
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FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity
Barykina, Natalia V, Sotskov, Vladimir P, Gruzdeva, Anna M, Wu, You Kure, Portugues, Ruben, Subach, Oksana M, Chefanova, Elizaveta S, Plusnin, Viktor V, Ivashkina, Olga I, Anokhin, Konstantin V, Vlaskina, Anna V, Korzhenevskiy, Dmitry A, Nikolaeva, Alena Y, Boyko, Konstantin M, Rakitina, Tatiana V, Varizhuk, Anna M, Pozmogova, Galina E, Subach, Fedor V
Published in International journal of molecular sciences (24.04.2020)
Published in International journal of molecular sciences (24.04.2020)
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Rapid directed molecular evolution of fluorescent proteins in mammalian cells
Babakhanova, Siranush, Jung, Erica E., Namikawa, Kazuhiko, Zhang, Hanbin, Wang, Yangdong, Subach, Oksana M., Korzhenevskiy, Dmitry A., Rakitina, Tatiana V., Xiao, Xian, Wang, Wenjing, Shi, Jing, Drobizhev, Mikhail, Park, Demian, Eisenhard, Lea, Tang, Hongyun, Köster, Reinhard W., Subach, Fedor V., Boyden, Edward S., Piatkevich, Kiryl D.
Published in Protein science (01.03.2022)
Published in Protein science (01.03.2022)
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Structure-based inhibitors targeting the alpha-helical domain of the Spiroplasma melliferum histone-like HU protein
Agapova, Yuliya K., Altukhov, Dmitry A., Timofeev, Vladimir I., Stroylov, Victor S., Mityanov, Vitaly S., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Smirnova, Eugenia V., Bocharov, Eduard V., Rakitina, Tatiana V.
Published in Scientific reports (15.09.2020)
Published in Scientific reports (15.09.2020)
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Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3″)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970
Alekseeva, Maria G., Boyko, Konstantin M., Nikolaeva, Alena Yu, Mavletova, Dilara A., Rudakova, Natalia N., Zakharevich, Natalia V., Korzhenevskiy, Dmitry A., Ziganshin, Rustam H., Popov, Vladimir O., Danilenko, Valery N.
Published in Archives of biochemistry and biophysics (15.08.2019)
Published in Archives of biochemistry and biophysics (15.08.2019)
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Activity modulation of the oligopeptidase B from Serratia proteamaculans by site-directed mutagenesis of amino acid residues surrounding catalytic triad histidine
Mikhailova, Anna G., Rakitina, Tatiana V., Timofeev, Vladimir I., Karlinsky, David M., Korzhenevskiy, Dmitry A., Agapova, Yulia К., Vlaskina, Anna V., Ovchinnikova, Marina V., Gorlenko, Valentina A., Rumsh, Lev D.
Published in Biochimie (01.08.2017)
Published in Biochimie (01.08.2017)
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Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3
Boyko, Konstantin M., Rakitina, Tatiana V., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Agapova, Yuliya K., Kamashev, Dmitry E., Kleymenov, Sergey Y., Popov, Vladimir O.
Published in Scientific reports (03.11.2016)
Published in Scientific reports (03.11.2016)
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Dodecamers derived from the crystal structure were found in the pre-crystallization solution of the transaminase from the thermophilic bacterium Thermobaculum terrenum by small-angle X-ray scattering
Marchenkova, Margarita A., Konarev, Petr V., Rakitina, Tatiana V., Timofeev, Vladimir I., Boikova, Anastasiia S., Dyakova, Yulia A., Ilina, Kseniia B., Korzhenevskiy, Dmitry A., Yu Nikolaeva, Alena, Pisarevsky, Yurii V., Kovalchuk, Mikhail V.
Published in Journal of biomolecular structure & dynamics (02.07.2020)
Published in Journal of biomolecular structure & dynamics (02.07.2020)
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Molecular dynamics complemented by site-directed mutagenesis reveals significant difference between the interdomain salt bridge networks stabilizing oligopeptidases B from bacteria and protozoa in their active conformations
Petrenko, Dmitry E., Mikhailova, Anna G., Timofeev, Vladimir I., Agapova, Yulia К., Karlinsky, David M., Komolov, Aleksandr S., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Rumsh, Lev D., Rakitina, Tatiana V.
Published in Journal of biomolecular structure & dynamics (01.11.2020)
Published in Journal of biomolecular structure & dynamics (01.11.2020)
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Journal Article
Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold
Timofeev, Vladimir I., Altukhov, Dmitry A., Talyzina, Anna A., Agapova, Yulia K., Vlaskina, Anna V., Korzhenevskiy, Dmitry A., Kleymenov, Sergey Yu, Bocharov, Eduard V., Rakitina, Tatiana V.
Published in Journal of biomolecular structure & dynamics (10.12.2018)
Published in Journal of biomolecular structure & dynamics (10.12.2018)
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Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation
Boyko, Konstantin M., Gorbacheva, Marina A., Korzhenevskiy, Dmitry A., Alekseeva, Maria G., Mavletova, Dilara A., Zakharevich, Natalia V., Elizarov, Sergey M., Rudakova, Natalia N., Danilenko, Valery N., Popov, Vladimir O.
Published in Biochemical and biophysical research communications (02.09.2016)
Published in Biochemical and biophysical research communications (02.09.2016)
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Journal Article
Enhanced conformational flexibility of the histone-like (HU) protein from Mycoplasma gallisepticum
Altukhov, Dmitry A., Talyzina, Anna A., Agapova, Yulia K., Vlaskina, Anna V., Korzhenevskiy, Dmitry A., Bocharov, Eduard V., Rakitina, Tatiana V., Timofeev, Vladimir I., Popov, Vladimir O.
Published in Journal of biomolecular structure & dynamics (02.01.2018)
Published in Journal of biomolecular structure & dynamics (02.01.2018)
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