Search Results - "Kortkhonjia, Ekaterine" :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

Opening and Closing of the Bacterial RNA Polymerase Clamp

Opening and Closing of the Bacterial RNA Polymerase Clamp

by Chakraborty, Anirban, Wang, Dongye, Ebright, Yon W., Korlann, You, Kortkhonjia, Ekaterine, Kim, Taiho, Chowdhury, Saikat, Wigneshweraraj, Sivaramesh, Irschik, Herbert, Jansen, Rolf, Nixon, B. Tracy, Knight, Jennifer, Weiss, Shimon, Ebright, Richard H.
Published in Science (American Association for the Advancement of Science) (03.08.2012)

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Initial Transcription by RNA Polymerase Proceeds Through a DNA-Scrunching Mechanism

Initial Transcription by RNA Polymerase Proceeds Through a DNA-Scrunching Mechanism

by Kapanidis, Achillefs N, Margeat, Emmanuel, Ho, Sam On, Kortkhonjia, Ekaterine, Weiss, Shimon, Ebright, Richard H
Published in Science (American Association for the Advancement of Science) (17.11.2006)

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Structural Organization of Bacterial RNA Polymerase Holoenzyme and the RNA Polymerase-Promoter Open Complex

Structural Organization of Bacterial RNA Polymerase Holoenzyme and the RNA Polymerase-Promoter Open Complex

by Mekler, Vladimir, Kortkhonjia, Ekaterine, Mukhopadhyay, Jayanta, Knight, Jennifer, Revyakin, Andrei, Kapanidis, Achillefs N., Niu, Wei, Ebright, Yon W., Levy, Ronald, Ebright, Richard H.
Published in Cell (08.03.2002)

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Retention of Transcription Initiation Factor σ70 in Transcription Elongation: Single-Molecule Analysis

Retention of Transcription Initiation Factor σ70 in Transcription Elongation: Single-Molecule Analysis

by Kapanidis, Achillefs N., Margeat, Emmanuel, Laurence, Ted A., Doose, Sören, Ho, Sam On, Mukhopadhyay, Jayanta, Kortkhonjia, Ekaterine, Mekler, Vladimir, Ebright, Richard H., Weiss, Shimon
Published in Molecular cell (01.11.2005)

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Upstream promoter sequences and [alpha]CTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

Upstream promoter sequences and [alpha]CTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

by Cellai, Sara, Mangiarotti, Laura, Vannini, Nicola, Naryshkin, Nikolai, Kortkhonjia, Ekaterine, Ebright, Richard H, Rivetti, Claudio
Published in EMBO reports (01.03.2007)

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Probing antibody internal dynamics with fluorescence anisotropy and molecular dynamics simulations

Probing antibody internal dynamics with fluorescence anisotropy and molecular dynamics simulations

by Kortkhonjia, Ekaterine, Brandman, Relly, Zhou, Joe Zhongxiang, Voelz, Vincent A., Chorny, Ilya, Kabakoff, Bruce, Patapoff, Thomas W., Dill, Ken A., Swartz, Trevor E.
Published in mAbs (01.03.2013)

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Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA

by Mukhopadhyay, J, Kapanidis, A N, Mekler, V, Kortkhonjia, E, Ebright, Y W, Ebright, R H
Published in Cell (24.08.2001)

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Upstream promoter sequences and αCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

Upstream promoter sequences and αCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

by Cellai, Sara, Mangiarotti, Laura, Vannini, Nicola, Naryshkin, Nikolai, Kortkhonjia, Ekaterine, Ebright, Richard H, Rivetti, Claudio
Published in EMBO reports (01.03.2007)

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Solution Dynamics of Monoclonal Antibodies: Experimental and Computational Approach

Solution Dynamics of Monoclonal Antibodies: Experimental and Computational Approach

by Kortkhonjia, Ekaterine, Brandman, Relly, Chorny, Ilya, Kissman, Julian, Patapoff, Tom, Kabakoff, Bruce, Dill, Ken, Swartz, Trevor
Published in Biophysical journal (01.01.2010)

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OPENING AND CLOSING OF THE BACTERIAL RNA POLYMERASE CLAMP: Single-molecule fluorescence experiments define RNA polymerase clamp conformation in transcription initiation and elongation

OPENING AND CLOSING OF THE BACTERIAL RNA POLYMERASE CLAMP: Single-molecule fluorescence experiments define RNA polymerase clamp conformation in transcription initiation and elongation

by Chakraborty, Anirban, Wang, Dongye, Ebright, Yon W., Korlann, You, Kortkhonjia, Ekaterine, Chowdhury, Saikat, Wigneshweraraj, Sivaramesh, Irschik, Herbert, Jansen, Rolf, Nixon, B. Tracy, Knight, Jennifer, Weiss, Shimon, Ebright, Richard H.
Published in Science (American Association for the Advancement of Science) (03.08.2012)

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INITIAL TRANSCRIPTION BY RNA POLYMERASE PROCEEDS THROUGH A DNA-SCRUNCHING MECHANISM: Single-molecule fluorescence-resonance-energy-transfer experiments establish that initial transcription proceeds through a “scrunching” mechanism, in which RNA polymerase remains fixed on promoter DNA and pulls downstream DNA into itself and past its active center

INITIAL TRANSCRIPTION BY RNA POLYMERASE PROCEEDS THROUGH A DNA-SCRUNCHING MECHANISM: Single-molecule fluorescence-resonance-energy-transfer experiments establish that initial transcription proceeds through a “scrunching” mechanism, in which RNA polymerase remains fixed on promoter DNA and pulls downstream DNA into itself and past its active center

by Kapanidis, Achillefs N., Margeat, Emmanuel, Ho, Sam On, Kortkhonjia, Ekaterine, Weiss, Shimon, Ebright, Richard H.
Published in Science (American Association for the Advancement of Science) (17.11.2006)

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Journal Article

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

by Cellai, Sara, Mangiarotti, Laura, Vannini, Nicola, Naryshkin, Nikolai, Kortkhonjia, Ekaterine, Ebright, Richard H, Rivetti, Claudio
Published in EMBO reports (01.03.2007)

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Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function

by Mukhopadhyay, Jayanta, Mekler, Vladimir, Kortkhonjia, Ekaterine, Kapanidis, Achillefs N, Ebright, Yon W, Ebright, Richard H
Published in Methods in enzymology (2003)

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Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

by Kapanidis, Achillefs N, Margeat, Emmanuel, Laurence, Ted A, Doose, Sören, Ho, Sam On, Mukhopadhyay, Jayanta, Kortkhonjia, Ekaterine, Mekler, Vladimir, Ebright, Richard H, Weiss, Shimon
Published in Molecular cell (11.11.2005)

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Journal Article

Retention of Transcription Initiation Factor σ 70 in Transcription Elongation: Single-Molecule Analysis

Retention of Transcription Initiation Factor σ 70 in Transcription Elongation: Single-Molecule Analysis

by Kapanidis, Achillefs N., Margeat, Emmanuel, Laurence, Ted A., Doose, Sören, Ho, Sam On, Mukhopadhyay, Jayanta, Kortkhonjia, Ekaterine, Mekler, Vladimir, Ebright, Richard H., Weiss, Shimon
Published in Molecular cell (2005)

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Translocation of σ70 with RNA Polymerase during Transcription

Translocation of σ70 with RNA Polymerase during Transcription

by Mukhopadhyay, Jayanta, Kapanidis, Achillefs N., Mekler, Vladimir, Kortkhonjia, Ekaterine, Ebright, Yon W., Ebright, Richard H.
Published in Cell (01.08.2001)

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Translocation of σ 70 with RNA Polymerase during Transcription : Fluorescence Resonance Energy Transfer Assay for Movement Relative to DNA

Translocation of σ 70 with RNA Polymerase during Transcription : Fluorescence Resonance Energy Transfer Assay for Movement Relative to DNA

by Mukhopadhyay, Jayanta, Kapanidis, Achillefs N., Mekler, Vladimir, Kortkhonjia, Ekaterine, Ebright, Yon W., Ebright, Richard H.
Published in Cell (2001)

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