Spatiotemporal analysis of human intestinal development at single-cell resolution
Fawkner-Corbett, David, Antanaviciute, Agne, Parikh, Kaushal, Jagielowicz, Marta, Gerós, Ana Sousa, Gupta, Tarun, Ashley, Neil, Khamis, Doran, Fowler, Darren, Morrissey, Edward, Cunningham, Chris, Johnson, Paul R.V., Koohy, Hashem, Simmons, Alison
Published in Cell (04.02.2021)
Published in Cell (04.02.2021)
Get full text
Journal Article
Colonic epithelial cell diversity in health and inflammatory bowel disease
Parikh, Kaushal, Antanaviciute, Agne, Fawkner-Corbett, David, Jagielowicz, Marta, Aulicino, Anna, Lagerholm, Christoffer, Davis, Simon, Kinchen, James, Chen, Hannah H., Alham, Nasullah Khalid, Ashley, Neil, Johnson, Errin, Hublitz, Philip, Bao, Leyuan, Lukomska, Joanna, Andev, Rajinder Singh, Björklund, Elisabet, Kessler, Benedikt M., Fischer, Roman, Goldin, Robert, Koohy, Hashem, Simmons, Alison
Published in Nature (London) (01.03.2019)
Published in Nature (London) (01.03.2019)
Get full text
Journal Article
Single-cell atlas of colonic CD8+ T cells in ulcerative colitis
Corridoni, Daniele, Antanaviciute, Agne, Gupta, Tarun, Fawkner-Corbett, David, Aulicino, Anna, Jagielowicz, Marta, Parikh, Kaushal, Repapi, Emmanouela, Taylor, Steve, Ishikawa, Dai, Hatano, Ryo, Yamada, Taketo, Xin, Wei, Slawinski, Hubert, Bowden, Rory, Napolitani, Giorgio, Brain, Oliver, Morimoto, Chikao, Koohy, Hashem, Simmons, Alison
Published in Nature medicine (01.09.2020)
Published in Nature medicine (01.09.2020)
Get full text
Journal Article
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
Kinchen, James, Chen, Hannah H., Parikh, Kaushal, Antanaviciute, Agne, Jagielowicz, Marta, Fawkner-Corbett, David, Ashley, Neil, Cubitt, Laura, Mellado-Gomez, Esther, Attar, Moustafa, Sharma, Eshita, Wills, Quin, Bowden, Rory, Richter, Felix C., Ahern, David, Puri, Kamal D., Henault, Jill, Gervais, Francois, Koohy, Hashem, Simmons, Alison
Published in Cell (04.10.2018)
Published in Cell (04.10.2018)
Get full text
Journal Article
Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors
Lee, Chloe H, Salio, Mariolina, Napolitani, Giorgio, Ogg, Graham, Simmons, Alison, Koohy, Hashem
Published in Frontiers in immunology (22.10.2020)
Published in Frontiers in immunology (22.10.2020)
Get full text
Journal Article
HLA‐dependent variation in SARS‐CoV‐2 CD8 + T cell cross‐reactivity with human coronaviruses
Buckley, Paul R., Lee, Chloe H., Pereira Pinho, Mariana, Ottakandathil Babu, Rosana, Woo, Jeongmin, Antanaviciute, Agne, Simmons, Alison, Ogg, Graham, Koohy, Hashem
Published in Immunology (01.05.2022)
Published in Immunology (01.05.2022)
Get full text
Journal Article
Discovery of a CD10-negative B-progenitor in human fetal life identifies unique ontogeny-related developmental programs
O'Byrne, Sorcha, Elliott, Natalina, Rice, Siobhan, Buck, Gemma, Fordham, Nicholas, Garnett, Catherine, Godfrey, Laura, Crump, Nicholas T., Wright, Gary, Inglott, Sarah, Hua, Peng, Psaila, Bethan, Povinelli, Benjamin, Knapp, David J.H.F., Agraz-Doblas, Antonio, Bueno, Clara, Varela, Ignacio, Bennett, Phillip, Koohy, Hashem, Watt, Suzanne M., Karadimitris, Anastasios, Mead, Adam J., Ancliff, Phillip, Vyas, Paresh, Menendez, Pablo, Milne, Thomas A., Roberts, Irene, Roy, Anindita
Published in Blood (26.09.2019)
Published in Blood (26.09.2019)
Get full text
Journal Article
Potential CD8+ T Cell Cross-Reactivity Against SARS-CoV-2 Conferred by Other Coronavirus Strains
Lee, Chloe H, Pinho, Mariana Pereira, Buckley, Paul R, Woodhouse, Isaac B, Ogg, Graham, Simmons, Alison, Napolitani, Giorgio, Koohy, Hashem
Published in Frontiers in immunology (05.11.2020)
Published in Frontiers in immunology (05.11.2020)
Get full text
Journal Article
Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens
Buckley, Paul R, Lee, Chloe H, Ma, Ruichong, Woodhouse, Isaac, Woo, Jeongmin, Tsvetkov, Vasily O, Shcherbinin, Dmitrii S, Antanaviciute, Agne, Shughay, Mikhail, Rei, Margarida, Simmons, Alison, Koohy, Hashem
Published in Briefings in bioinformatics (13.05.2022)
Published in Briefings in bioinformatics (13.05.2022)
Get full text
Journal Article
HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes
Karnaukhov, Vadim, Paes, Wayne, Woodhouse, Isaac B, Partridge, Thomas, Nicastri, Annalisa, Brackenridge, Simon, Shcherbinin, Dmitrii, Chudakov, Dmitry M, Zvyagin, Ivan V, Ternette, Nicola, Koohy, Hashem, Borrow, Persephone, Shugay, Mikhail
Published in Frontiers in immunology (20.12.2022)
Published in Frontiers in immunology (20.12.2022)
Get full text
Journal Article
A robust deep learning workflow to predict CD8 + T-cell epitopes
Lee, Chloe H, Huh, Jaesung, Buckley, Paul R, Jang, Myeongjun, Pinho, Mariana Pereira, Fernandes, Ricardo A, Antanaviciute, Agne, Simmons, Alison, Koohy, Hashem
Published in Genome medicine (13.09.2023)
Published in Genome medicine (13.09.2023)
Get full text
Journal Article
P298 Checkpoint inhibitor colitis: insights from bench and bedside
Gupta, Tarun, Antanaviciute, Agne, Aulicino, Anna, Cheung, Vincent, Olsson-Brown, Anna, Geros, Ms Ana, Parikh, Kaushal, Jagielowicz, Ms Marta, Chen, Hannah, Sacco, Joseph, Heseltine, Jonathan, Subramanian, Sreedhar, Fryer, Eve, Collantes, Elena, Pirmohammed, Prof Punir, Fairfax, Benjamin, Payne, Miranda, Tuthill, Mark, Chitnis, Meenali, Protheroe, Prof Andrew, Middleton, Prof Mark, Koohy, Hashem, Brain, Oliver, Simmons, Alison
Published in Gut (01.01.2021)
Published in Gut (01.01.2021)
Get full text
Journal Article
Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells
Koohy, Hashem, Bolland, Daniel J, Matheson, Louise S, Schoenfelder, Stefan, Stellato, Claudia, Dimond, Andrew, Várnai, Csilla, Chovanec, Peter, Chessa, Tamara, Denizot, Jeremy, Manzano Garcia, Raquel, Wingett, Steven W, Freire-Pritchett, Paula, Nagano, Takashi, Hawkins, Phillip, Stephens, Len, Elderkin, Sarah, Spivakov, Mikhail, Fraser, Peter, Corcoran, Anne E, Varga-Weisz, Patrick D
Published in Genome Biology (05.09.2018)
Published in Genome Biology (05.09.2018)
Get full text
Journal Article
Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination
Bolland, Daniel J., Koohy, Hashem, Wood, Andrew L., Matheson, Louise S., Krueger, Felix, Stubbington, Michael J.T., Baizan-Edge, Amanda, Chovanec, Peter, Stubbs, Bryony A., Tabbada, Kristina, Andrews, Simon R., Spivakov, Mikhail, Corcoran, Anne E.
Published in Cell reports (Cambridge) (14.06.2016)
Published in Cell reports (Cambridge) (14.06.2016)
Get full text
Journal Article
Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination
Matheson, Louise S, Bolland, Daniel J, Chovanec, Peter, Krueger, Felix, Andrews, Simon, Koohy, Hashem, Corcoran, Anne E
Published in Frontiers in immunology (17.11.2017)
Published in Frontiers in immunology (17.11.2017)
Get full text
Journal Article