Genome-wide association analysis of stalk biomass and anatomical traits in maize
Mazaheri, Mona, Heckwolf, Marlies, Vaillancourt, Brieanne, Gage, Joseph L, Burdo, Brett, Heckwolf, Sven, Barry, Kerrie, Lipzen, Anna, Ribeiro, Camila Bastos, Kono, Thomas J Y, Kaeppler, Heidi F, Spalding, Edgar P, Hirsch, Candice N, Robin Buell, C, de Leon, Natalia, Kaeppler, Shawn M
Published in BMC plant biology (31.01.2019)
Published in BMC plant biology (31.01.2019)
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Journal Article
The home field advantage of modern plant breeding
Ewing, Patrick M, Runck, Bryan C, Kono, Thomas Y J, Kantar, Michael B
Published in PloS one (26.12.2019)
Published in PloS one (26.12.2019)
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Journal Article
Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes
Campbell, Benjamin W., Hofstad, Anna N., Sreekanta, Suma, Fu, Fengli, Kono, Thomas J. Y., O’Rourke, Jamie A., Vance, Carroll P., Muehlbauer, Gary J., Stupar, Robert M.
Published in Theoretical and applied genetics (01.09.2016)
Published in Theoretical and applied genetics (01.09.2016)
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Journal Article
A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants
Čermák, Tomáš, Curtin, Shaun J., Gil-Humanes, Javier, Čegan, Radim, Kono, Thomas J.Y., Konečná, Eva, Belanto, Joseph J., Starker, Colby G., Mathre, Jade W., Greenstein, Rebecca L., Voytas, Daniel F.
Published in The Plant cell (01.06.2017)
Published in The Plant cell (01.06.2017)
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Journal Article
Interruption of continuous opioid exposure exacerbates drug-evoked adaptations in the mesolimbic dopamine system
Lefevre, Emilia M, Pisansky, Marc T, Toddes, Carlee, Baruffaldi, Federico, Pravetoni, Marco, Tian, Lin, Kono, Thomas J Y, Rothwell, Patrick E
Published in Neuropsychopharmacology (New York, N.Y.) (01.10.2020)
Published in Neuropsychopharmacology (New York, N.Y.) (01.10.2020)
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Journal Article
The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations
Poets, Ana M, Mohammadi, Mohsen, Seth, Kiran, Wang, Hongyun, Kono, Thomas J Y, Fang, Zhou, Muehlbauer, Gary J, Smith, Kevin P, Morrell, Peter L
Published in G3 : genes - genomes - genetics (01.03.2016)
Published in G3 : genes - genomes - genetics (01.03.2016)
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Journal Article
Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley
Nice, Liana M, Steffenson, Brian J, Brown-Guedira, Gina L, Akhunov, Eduard D, Liu, Chaochih, Kono, Thomas J Y, Morrell, Peter L, Blake, Thomas K, Horsley, Richard D, Smith, Kevin P, Muehlbauer, Gary J
Published in Genetics (Austin) (01.07.2016)
Published in Genetics (Austin) (01.07.2016)
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Journal Article
Inhalation exposure to cigarette smoke and inflammatory agents induces epigenetic changes in the lung
Seiler, Christopher L, Song, J Ung Min, Kotandeniya, Delshanee, Chen, Jianji, Kono, Thomas J Y, Han, Qiyuan, Colwell, Mathia, Auch, Benjamin, Sarver, Aaron L, Upadhyaya, Pramod, Ren, Yanan, Faulk, Christopher, De Flora, Silvio, La Maestra, Sebastiano, Chen, Yue, Kassie, Fekadu, Tretyakova, Natalia Y
Published in Scientific reports (09.07.2020)
Published in Scientific reports (09.07.2020)
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Journal Article
Multi-Omics Characterization of Inflammatory Bowel Disease-Induced Hyperplasia/Dysplasia in the Rag2 -/- / Il10 -/- Mouse Model
Han, Qiyuan, Kono, Thomas J Y, Knutson, Charles G, Parry, Nicola M, Seiler, Christopher L, Fox, James G, Tannenbaum, Steven R, Tretyakova, Natalia Y
Published in International journal of molecular sciences (31.12.2020)
Published in International journal of molecular sciences (31.12.2020)
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Journal Article
Epigenetic Changes in Alveolar Type II Lung Cells of A/J Mice Following Intranasal Treatment with Lipopolysaccharide
Seiler, Christopher L, Song, Jung Min, Fernandez, Jenna, Abrahante, Juan E, Kono, Thomas J. Y, Chen, Yue, Ren, Yanan, Kassie, Fekadu, Tretyakova, Natalia Y
Published in Chemical research in toxicology (20.05.2019)
Published in Chemical research in toxicology (20.05.2019)
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Journal Article
Genomic variation and DNA repair associated with soybean transgenesis: a comparison to cultivars and mutagenized plants
Anderson, Justin E, Michno, Jean-Michel, Kono, Thomas J Y, Stec, Adrian O, Campbell, Benjamin W, Curtin, Shaun J, Stupar, Robert M
Published in BMC biotechnology (12.05.2016)
Published in BMC biotechnology (12.05.2016)
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Journal Article
Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans
Anderson, Justin E, Kono, Thomas J Y, Stupar, Robert M, Kantar, Michael B, Morrell, Peter L
Published in G3 : genes - genomes - genetics (01.04.2016)
Published in G3 : genes - genomes - genetics (01.04.2016)
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Journal Article
angsd-wrapper: utilities for analysing next-generation sequencing data
Durvasula, Arun, Hoffman, Paul J., Kent, Tyler V., Liu, Chaochih, Kono, Thomas J. Y., Morrell, Peter L., Ross-Ibarra, Jeffrey
Published in Molecular ecology resources (01.11.2016)
Published in Molecular ecology resources (01.11.2016)
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Journal Article
The role of gene flow in rapid and repeated evolution of cave‐related traits in Mexican tetra, Astyanax mexicanus
Herman, Adam, Brandvain, Yaniv, Weagley, James, Jeffery, William R., Keene, Alex C., Kono, Thomas J. Y., Bilandžija, Helena, Borowsky, Richard, Espinasa, Luis, O'Quin, Kelly, Ornelas‐García, Claudia P., Yoshizawa, Masato, Carlson, Brian, Maldonado, Ernesto, Gross, Joshua B., Cartwright, Reed A., Rohner, Nicolas, Warren, Wesley C., McGaugh, Suzanne E.
Published in Molecular ecology (01.11.2018)
Published in Molecular ecology (01.11.2018)
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Journal Article
The Role of Deleterious Substitutions in Crop Genomes
Kono, Thomas J Y, Fu, Fengli, Mohammadi, Mohsen, Hoffman, Paul J, Liu, Chaochih, Stupar, Robert M, Smith, Kevin P, Tiffin, Peter, Fay, Justin C, Morrell, Peter L
Published in Molecular biology and evolution (01.09.2016)
Published in Molecular biology and evolution (01.09.2016)
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Journal Article
The Fate of Deleterious Variants in a Barley Genomic Prediction Population
Kono, Thomas J Y, Liu, Chaochih, Vonderharr, Emily E, Koenig, Daniel, Fay, Justin C, Smith, Kevin P, Morrell, Peter L
Published in Genetics (Austin) (01.12.2019)
Published in Genetics (Austin) (01.12.2019)
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Journal Article
The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines
Brohammer, Alex B., Kono, Thomas J. Y., Springer, Nathan M., McGaugh, Suzanne E., Hirsch, Candice N.
Published in The Plant journal : for cell and molecular biology (01.01.2018)
Published in The Plant journal : for cell and molecular biology (01.01.2018)
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