Improvements to the cluster Newton method for underdetermined inverse problems
Gaudreau, P., Hayami, K., Aoki, Y., Safouhi, H., Konagaya, A.
Published in Journal of computational and applied mathematics (01.08.2015)
Published in Journal of computational and applied mathematics (01.08.2015)
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Journal Article
Transformation potency of ErbB heterodimer signaling is determined by B-Raf kinase
HATAKEYAMA, M, YUMOTO, N, YU, X, SHIROUZU, M, YOKOYAMA, S, KONAGAYA, A
Published in Oncogene (24.06.2004)
Published in Oncogene (24.06.2004)
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Journal Article
High dimensional function optimization using a new genetic local search suitable for parallel computers
Kimura, S., Konagaya, A.
Published in SMC'03 Conference Proceedings. 2003 IEEE International Conference on Systems, Man and Cybernetics. Conference Theme - System Security and Assurance (Cat. No.03CH37483) (2003)
Published in SMC'03 Conference Proceedings. 2003 IEEE International Conference on Systems, Man and Cybernetics. Conference Theme - System Security and Assurance (Cat. No.03CH37483) (2003)
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Conference Proceeding
OBIGrid: towards a new distributed platform for bioinformatics
Konagaya, A.
Published in 21st IEEE Symposium on Reliable Distributed Systems, 2002. Proceedings (2002)
Published in 21st IEEE Symposium on Reliable Distributed Systems, 2002. Proceedings (2002)
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Conference Proceeding
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
Kimura, Shuhei, Ide, Kaori, Kashihara, Aiko, Kano, Makoto, Hatakeyama, Mariko, Masui, Ryoji, Nakagawa, Noriko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Konagaya, Akihiko
Published in Bioinformatics (01.04.2005)
Published in Bioinformatics (01.04.2005)
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Journal Article
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Okazaki, Y, Furuno, M, Kasukawa, T, Adachi, J, Bono, H, Nikaido, I, Saito, R, Suzuki, H, Yamanaka, I, Kiyosawa, H, Tomaru, Y, Hasegawa, Y, Nogami, A, Schönbach, C, Baldarelli, R, Hill, D P, Hume, D A, Quackenbush, J, Schriml, L M, Matsuda, H, Beisel, K W, Bradt, D, Chothia, C, Corbani, L E, Cousins, S, Dalla, E, Dragani, T A, Fletcher, C F, Gaasterland, T, Gariboldi, M, Gissi, C, Godzik, A, Grimmond, S, Gustincich, S, Hirokawa, N, Jackson, I J, Kanai, A, Kedzierski, R M, King, B L, Kurochkin, I V, Lenhard, B, Maglott, D R, Marchionni, L, McKenzie, L, Nagashima, T, Pavan, W J, Pertea, G, Pesole, G, Petrovsky, N, Pillai, R, Pontius, J U, Qi, D, Ramachandran, S, Ravasi, T, Reed, J C, Reed, D J, Reid, J, Ring, B Z, Ringwald, M, Sandelin, A, Setou, M, Shimada, K, Takenaka, Y, Taylor, M S, Teasdale, R D, Tomita, M, Verardo, R, Wagner, L, Wahlestedt, C, Wang, Y, Watanabe, Y, Wells, C, Wilming, L G, Wynshaw-Boris, A, Yang, I, Yang, L, Yuan, Z, Zimmer, A, Carninci, P, Hayatsu, N, Hirozane-Kishikawa, T, Nakamura, M, Sakazume, N, Sato, K, Shiraki, T, Kawai, J, Aizawa, K, Arakawa, T, Fukuda, S, Hashizume, W, Imotani, K, Miyazaki, A, Sakai, K, Sasaki, D, Shibata, K, Shinagawa, A, Lander, E S, Rogers, J, Birney, E, Hayashizaki, Y
Published in Nature (London) (05.12.2002)
Published in Nature (London) (05.12.2002)
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Journal Article
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
Iida, K, Seki, M, Sakurai, T, Satou, M, Akiyama, K, Toyoda, T, Konagaya, A, Shinozaki, K
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Journal Article
A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling
Hatakeyama, Mariko, Kimura, Shuhei, Naka, Takashi, Kawasaki, Takuji, Yumoto, Noriko, Ichikawa, Mio, Kim, Jae-Hoon, Saito, Kazuki, Saeki, Mihoro, Shirouzu, Mikako, Yokoyama, Shigeyuki, Konagaya, Akihiko
Published in Biochemical journal (15.07.2003)
Published in Biochemical journal (15.07.2003)
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Journal Article
Cache-processor coupling: a fast and wide on-chip data cache design
Motomura, M., Inoue, T., Yamada, H., Konagaya, A.
Published in IEEE journal of solid-state circuits (01.04.1995)
Published in IEEE journal of solid-state circuits (01.04.1995)
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Journal Article
Conference Proceeding
An effective method for selecting siRNA target sequences in mammalian cells
Takasaki, Shigeru, Kotani, Shuji, Konagaya, Akihiko
Published in Cell cycle (Georgetown, Tex.) (01.06.2004)
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Published in Cell cycle (Georgetown, Tex.) (01.06.2004)
Journal Article
Microchromosomal deletions involving SCNIA and adjacent genes in severe myoclonic epilepsy in infancy
WANG, Ji-Wen, KURAHASHI, Hirokazu, FUJII, Tatsuya, ITO, Masatoshi, OKUNO, Takehiko, SHIRASAKA, Yukiyoshi, NATSUME, Jun, HASEGAWA, Aki, KONAGAYA, Akihiko, KANEKO, Sunao, HIROSE, Shinichi, ISHII, Atsushi, KOJIMA, Toshio, OHFU, Masaharu, INOUE, Takahito, OGAWA, Atsushi, YASUMOTO, Sawa, OGUNI, Hirokazu, KURE, Shigeo
Published in Epilepsia (Copenhagen) (01.09.2008)
Published in Epilepsia (Copenhagen) (01.09.2008)
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Journal Article
1P055 Molecular dynamics simulation of chloride channel ClC
Suenaga, A., Goto, K., Yeh, Jay, Taiji, M., Toyama, A., Takeuchi, H., Son, Mingyu, Takayama, K., Iwamoto, M., Sato, I., Narahashi, T., Konagaya, A.
Published in Seibutsu Butsuri (10.11.2004)
Published in Seibutsu Butsuri (10.11.2004)
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Journal Article
RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
Sakurai, T, Satou, M, Akiyama, K, Iida, K, Seki, M, Kuromori, T, Ito, T, Konagaya, A, Toyoda, T, Shinozaki, K
Published in Nucleic acids research (01.01.2005)
Published in Nucleic acids research (01.01.2005)
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Journal Article
Automatic quantification of morphological traits via three‐dimensional measurement of Arabidopsis
Kaminuma, Eli, Heida, Naohiko, Tsumoto, Yuko, Yamamoto, Naoki, Goto, Nobuharu, Okamoto, Naoki, Konagaya, Akihiko, Matsui, Minami, Toyoda, Tetsuro
Published in The Plant journal : for cell and molecular biology (01.04.2004)
Published in The Plant journal : for cell and molecular biology (01.04.2004)
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Journal Article
The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses
Tsuji, S.(Kanazawa Univ. (Japan). Advanced Science Research Center), Ueda, K, Nishiyama, T, Hasebe, M, Yoshikawa, S, Konagaya, A, Nishiuchi, T, Yamaguchi, K
Published in Journal of plant research (01.03.2007)
Published in Journal of plant research (01.03.2007)
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Journal Article
Inference of S-system models of genetic networks using a genetic local search
Kimura, S., Hatakeyama, M., Konagaya, A.
Published in The 2003 Congress on Evolutionary Computation, 2003. CEC '03 (2003)
Published in The 2003 Congress on Evolutionary Computation, 2003. CEC '03 (2003)
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Conference Proceeding
Novel Mechanism of Interaction of p85 Subunit of Phosphatidylinositol 3-Kinase and ErbB3 Receptor-derived Phosphotyrosyl Peptides
Suenaga, Atsushi, Takada, Naoki, Hatakeyama, Mariko, Ichikawa, Mio, Yu, Xiaomei, Tomii, Kentaro, Okimoto, Noriaki, Futatsugi, Noriyuki, Narumi, Tetsu, Shirouzu, Mikako, Yokoyama, Shigeyuki, Konagaya, Akihiko, Taiji, Makoto
Published in The Journal of biological chemistry (14.01.2005)
Published in The Journal of biological chemistry (14.01.2005)
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Journal Article