The Resilient Dairy Genome Project—A general overview of methods and objectives related to feed efficiency and methane emissions
van Staaveren, Nienke, Rojas de Oliveira, Hinayah, Houlahan, Kerry, Chud, Tatiane C.S., Oliveira Jr, Gerson A., Hailemariam, Dagnachew, Kistemaker, Gerrit, Miglior, Filippo, Plastow, Graham, Schenkel, Flavio S., Cerri, Ronaldo, Sirard, Marc Andre, Stothard, Paul, Pryce, Jennie, Butty, Adrien, Stratz, Patrick, Abdalla, Emhimad A.E., Segelke, Dierck, Stamer, Eckhard, Thaller, Georg, Lassen, Jan, Manzanilla-Pech, Coralia Ines V., Stephansen, Rasmus B., Charfeddine, Noureddine, García-Rodríguez, Aser, González-Recio, Oscar, López-Paredes, Javier, Baldwin, Ransom, Burchard, Javier, Parker Gaddis, Kristen L., Koltes, James E., Peñagaricano, Francisco, Santos, José Eduardo P., Tempelman, Robert J., VandeHaar, Michael, Weigel, Kent, White, Heather, Baes, Christine F.
Published in Journal of dairy science (01.03.2024)
Published in Journal of dairy science (01.03.2024)
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Journal Article
Dry matter intake in US Holstein cows: Exploring the genomic and phenotypic impact of milk components and body weight composite
Toghiani, Sajjad, VanRaden, Paul M., VandeHaar, Michael J., Baldwin, Ransom L., Weigel, Kent A., White, Heather M., Peñagaricano, Francisco, Koltes, James E., Santos, José Eduardo P., Parker Gaddis, Kristen L., Tempelman, Robert J.
Published in Journal of dairy science (01.09.2024)
Published in Journal of dairy science (01.09.2024)
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Journal Article
Gene Co-Expression Network Analysis Unraveling Transcriptional Regulation of High-Altitude Adaptation of Tibetan Pig
Jia, Cunling, Kong, Xiaoyan, Koltes, James E, Gou, Xiao, Yang, Shuli, Yan, Dawei, Lu, Shaoxiong, Wei, Zehui
Published in PloS one (09.12.2016)
Published in PloS one (09.12.2016)
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Journal Article
A Vision for Development and Utilization of High-Throughput Phenotyping and Big Data Analytics in Livestock
Koltes, James E, Cole, John B, Clemmens, Roxanne, Dilger, Ryan N, Kramer, Luke M, Lunney, Joan K, McCue, Molly E, McKay, Stephanie D, Mateescu, Raluca G, Murdoch, Brenda M, Reuter, Ryan, Rexroad, Caird E, Rosa, Guilherme J M, Serão, Nick V L, White, Stephen N, Woodward-Greene, M Jennifer, Worku, Millie, Zhang, Hongwei, Reecy, James M
Published in Frontiers in genetics (17.12.2019)
Published in Frontiers in genetics (17.12.2019)
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Journal Article
Putative regulatory factors associated with intramuscular fat content
Cesar, Aline S M, Regitano, Luciana C A, Koltes, James E, Fritz-Waters, Eric R, Lanna, Dante P D, Gasparin, Gustavo, Mourão, Gerson B, Oliveira, Priscila S N, Reecy, James M, Coutinho, Luiz L
Published in PloS one (04.06.2015)
Published in PloS one (04.06.2015)
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Journal Article
The genetic architecture of complete blood counts in lactating Holstein dairy cows
Siberski-Cooper, Cori J, Mayes, Mary S, Gorden, Patrick J, Kramer, Luke, Bhatia, Vishesh, Koltes, James E
Published in Frontiers in genetics (27.03.2024)
Published in Frontiers in genetics (27.03.2024)
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Journal Article
Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle
Oliveira, Gabriella B, Regitano, Luciana C A, Cesar, Aline S M, Reecy, James M, Degaki, Karina Y, Poleti, Mirele D, Felício, Andrezza M, Koltes, James E, Coutinho, Luiz L
Published in BMC genomics (07.02.2018)
Published in BMC genomics (07.02.2018)
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Journal Article
Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits
Cesar, Aline S M, Regitano, Luciana C A, Reecy, James M, Poleti, Mirele D, Oliveira, Priscila S N, de Oliveira, Gabriella B, Moreira, Gabriel C M, Mudadu, Maurício A, Tizioto, Polyana C, Koltes, James E, Fritz-Waters, Elyn, Kramer, Luke, Garrick, Dorian, Beiki, Hamid, Geistlinger, Ludwig, Mourão, Gerson B, Zerlotini, Adhemar, Coutinho, Luiz L
Published in BMC genomics (27.06.2018)
Published in BMC genomics (27.06.2018)
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Journal Article
Integrative profiling of gene expression and chromatin accessibility elucidates specific transcriptional networks in porcine neutrophils
Herrera-Uribe, Juber, Lim, Kyu-Sang, Byrne, Kristen A, Daharsh, Lance, Liu, Haibo, Corbett, Ryan J, Marco, Gianna, Schroyen, Martine, Koltes, James E, Loving, Crystal L, Tuggle, Christopher K
Published in Frontiers in genetics (2023)
Published in Frontiers in genetics (2023)
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Journal Article
Web Resource
Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle
Gonçalves, Tássia Mangetti, de Almeida Regitano, Luciana Correia, Koltes, James E, Cesar, Aline Silva Mello, da Silva Andrade, Sónia Cristina, Mourão, Gerson Barreto, Gasparin, Gustavo, Moreira, Gabriel Costa Monteiro, Fritz-Waters, Elyn, Reecy, James M, Coutinho, Luiz Lehmann
Published in Frontiers in genetics (05.10.2018)
Published in Frontiers in genetics (05.10.2018)
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Journal Article
Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle
Andrade, Bruno G N, Bressani, Flavia A, Cuadrat, Rafael R C, Cardoso, Tainã F, Malheiros, Jessica M, de Oliveira, Priscila S N, Petrini, Juliana, Mourão, Gerson B, Coutinho, Luiz L, Reecy, James M, Koltes, James E, Neto, Adhemar Z, R de Medeiros, Sérgio, Berndt, Alexandre, Palhares, Julio C P, Afli, Haithem, Regitano, Luciana C A
Published in Frontiers in genetics (17.05.2022)
Published in Frontiers in genetics (17.05.2022)
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Journal Article
DNA methylation may affect beef tenderness through signal transduction in Bos indicus
de Souza, Marcela Maria, Niciura, Simone Cristina Méo, Rocha, Marina Ibelli Pereira, Pan, Zhangyuan, Zhou, Huaijun, Bruscadin, Jennifer Jessica, da Silva Diniz, Wellison Jarles, Afonso, Juliana, de Oliveira, Priscila Silva Neubern, Mourão, Gerson B, Zerlotini, Adhemar, Coutinho, Luiz Lehmann, Koltes, James E, de Almeida Regitano, Luciana Correia
Published in Epigenetics & chromatin (13.05.2022)
Published in Epigenetics & chromatin (13.05.2022)
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Journal Article
Impact of epistasis effects on the accuracy of predicting phenotypic values of residual feed intake in U. S Holstein cows
Liang, Zuoxiang, Prakapenka, Dzianis, Parker Gaddis, Kristen L, VandeHaar, Michael J, Weigel, Kent A, Tempelman, Robert J, Koltes, James E, Santos, José Eduardo P, White, Heather M, Peñagaricano, Francisco, Baldwin Vi, Ransom L, Da, Yang
Published in Frontiers in genetics (01.11.2022)
Published in Frontiers in genetics (01.11.2022)
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Journal Article
Potential Biomarkers for Feed Efficiency-Related Traits in Nelore Cattle Identified by Co-expression Network and Integrative Genomics Analyses
de Lima, Andressa O, Koltes, James E, Diniz, Wellison J S, de Oliveira, Priscila S N, Cesar, Aline S M, Tizioto, Polyana C, Afonso, Juliana, de Souza, Marcela M, Petrini, Juliana, Rocha, Marina I P, Cardoso, Tainã F, Neto, Adhemar Zerlotini, Coutinho, Luiz L, Mourão, Gerson B, Regitano, Luciana C A
Published in Frontiers in genetics (04.03.2020)
Published in Frontiers in genetics (04.03.2020)
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Journal Article
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
Baes, Christine F, Dolezal, Marlies A, Koltes, James E, Bapst, Beat, Fritz-Waters, Eric, Jansen, Sandra, Flury, Christine, Signer-Hasler, Heidi, Stricker, Christian, Fernando, Rohan, Fries, Ruedi, Moll, Juerg, Garrick, Dorian J, Reecy, James M, Gredler, Birgit
Published in BMC genomics (01.11.2014)
Published in BMC genomics (01.11.2014)
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Journal Article
Co-Expression Networks Reveal Potential Regulatory Roles of miRNAs in Fatty Acid Composition of Nelore Cattle
de Oliveira, Priscila S N, Coutinho, Luiz L, Cesar, Aline S M, Diniz, Wellison J da Silva, de Souza, Marcela M, Andrade, Bruno G, Koltes, James E, Mourão, Gerson B, Zerlotini, Adhemar, Reecy, James M, Regitano, Luciana C A
Published in Frontiers in genetics (11.07.2019)
Published in Frontiers in genetics (11.07.2019)
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Journal Article
Genetic Basis of Blood-Based Traits and Their Relationship With Performance and Environment in Beef Cattle at Weaning
Chinchilla-Vargas, Josue, Kramer, Luke M., Tucker, John D., Hubbell, Donald S., Powell, Jeremy G., Lester, Toby D., Backes, Elizabeth A., Anschutz, Karen, Decker, Jared E., Stalder, Kenneth J., Rothschild, Max F., Koltes, James E.
Published in Frontiers in genetics (03.07.2020)
Published in Frontiers in genetics (03.07.2020)
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Journal Article