Loading…
Assembly of long, error-prone reads using repeat graphs
Kolmogorov, Mikhail, Yuan, Jeffrey, Lin, Yu, Pevzner, Pavel A.
Published in Nature biotechnology (01.05.2019)
Published in Nature biotechnology (01.05.2019)
Get full text
Journal Article
Loading…
metaFlye: scalable long-read metagenome assembly using repeat graphs
Kolmogorov, Mikhail, Bickhart, Derek M., Behsaz, Bahar, Gurevich, Alexey, Rayko, Mikhail, Shin, Sung Bong, Kuhn, Kristen, Yuan, Jeffrey, Polevikov, Evgeny, Smith, Timothy P. L., Pevzner, Pavel A.
Published in Nature methods (01.11.2020)
Published in Nature methods (01.11.2020)
Get full text
Journal Article
Loading…
Ragout—a reference-assisted assembly tool for bacterial genomes
Kolmogorov, Mikhail, Raney, Brian, Paten, Benedict, Pham, Son
Published in Bioinformatics (Oxford, England) (15.06.2014)
Published in Bioinformatics (Oxford, England) (15.06.2014)
Get full text
Journal Article
Loading…
Assembly of long error-prone reads using de Bruijn graphs
Lin, Yu, Yuan, Jeffrey, Kolmogorov, Mikhail, Shen, Max W., Chaisson, Mark, Pevzner, Pavel A.
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
Get full text
Journal Article
Loading…
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
Shafin, Kishwar, Pesout, Trevor, Chang, Pi-Chuan, Nattestad, Maria, Kolesnikov, Alexey, Goel, Sidharth, Baid, Gunjan, Kolmogorov, Mikhail, Eizenga, Jordan M., Miga, Karen H., Carnevali, Paolo, Jain, Miten, Carroll, Andrew, Paten, Benedict
Published in Nature methods (01.11.2021)
Published in Nature methods (01.11.2021)
Get full text
Journal Article
Loading…
Loading…
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Bickhart, Derek M., Kolmogorov, Mikhail, Tseng, Elizabeth, Portik, Daniel M., Korobeynikov, Anton, Tolstoganov, Ivan, Uritskiy, Gherman, Liachko, Ivan, Sullivan, Shawn T., Shin, Sung Bong, Zorea, Alvah, Andreu, Victòria Pascal, Panke-Buisse, Kevin, Medema, Marnix H., Mizrahi, Itzhak, Pevzner, Pavel A., Smith, Timothy P. L.
Published in Nature biotechnology (01.05.2022)
Published in Nature biotechnology (01.05.2022)
Get full text
Journal Article
Loading…
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
Antipov, Dmitry, Rayko, Mikhail, Kolmogorov, Mikhail, Pevzner, Pavel A.
Published in Genome Biology (21.02.2022)
Published in Genome Biology (21.02.2022)
Get full text
Journal Article
Loading…
Single-molecule protein identification by sub-nanopore sensors
Kolmogorov, Mikhail, Kennedy, Eamonn, Dong, Zhuxin, Timp, Gregory, Pevzner, Pavel A.
Published in PLoS computational biology (01.05.2017)
Published in PLoS computational biology (01.05.2017)
Get full text
Journal Article
Loading…
Genetic regulation of TERT splicing affects cancer risk by altering cellular longevity and replicative potential
Florez-Vargas, Oscar, Ho, Michelle, Hogshead, Maxwell H., Papenberg, Brenen W., Lee, Chia-Han, Forsythe, Kaitlin, Jones, Kristine, Luo, Wen, Teshome, Kedest, Blauwendraat, Cornelis, Billingsley, Kimberley J., Kolmogorov, Mikhail, Meredith, Melissa, Paten, Benedict, Chari, Raj, Zhang, Chi, Schneekloth, John S., Machiela, Mitchell J., Chanock, Stephen J., Gadalla, Shahinaz M., Savage, Sharon A., Mbulaiteye, Sam M., Prokunina-Olsson, Ludmila
Published in Nature communications (16.02.2025)
Published in Nature communications (16.02.2025)
Get full text
Journal Article
Loading…
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Bickhart, Derek M., Kolmogorov, Mikhail, Tseng, Elizabeth, Portik, Daniel M., Korobeynikov, Anton, Tolstoganov, Ivan, Uritskiy, Gherman, Liachko, Ivan, Sullivan, Shawn T., Shin, Sung Bong, Zorea, Alvah, Andreu, Victòria Pascal, Panke-Buisse, Kevin, Medema, Marnix H., Mizrahi, Itzhak, Pevzner, Pavel A., Smith, Timothy P. L.
Published in Nature biotechnology (03.01.2022)
Published in Nature biotechnology (03.01.2022)
Get full text
Journal Article
Loading…
Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing
Kazantseva, Ekaterina, Donmez, Ataberk, Frolova, Maria, Pop, Mihai, Kolmogorov, Mikhail
Published in Nature methods (01.11.2024)
Published in Nature methods (01.11.2024)
Get full text
Journal Article
Loading…
Loading…
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Bankevich, Anton, Bzikadze, Andrey V., Kolmogorov, Mikhail, Antipov, Dmitry, Pevzner, Pavel A.
Published in Nature biotechnology (01.07.2022)
Published in Nature biotechnology (01.07.2022)
Get full text
Journal Article
Loading…
Loading…
Analyzing rare mutations in metagenomes assembled using long and accurate reads
Fedarko, Marcus W., Kolmogorov, Mikhail, Pevzner, Pavel A.
Published in Genome research (01.11.2022)
Published in Genome research (01.11.2022)
Get full text
Journal Article
Loading…
High-quality genome sequences of uncultured microbes by assembly of read clouds
Bishara, Alex, Moss, Eli L, Kolmogorov, Mikhail, Parada, Alma E, Weng, Ziming, Sidow, Arend, Dekas, Anne E, Batzoglou, Serafim, Bhatt, Ami S
Published in Nature biotechnology (01.12.2018)
Published in Nature biotechnology (01.12.2018)
Get full text
Journal Article
Loading…
Chromosome assembly of large and complex genomes using multiple references
Kolmogorov, Mikhail, Armstrong, Joel, Raney, Brian J., Streeter, Ian, Dunn, Matthew, Yang, Fengtang, Odom, Duncan, Flicek, Paul, Keane, Thomas M., Thybert, David, Paten, Benedict, Pham, Son
Published in Genome research (01.11.2018)
Published in Genome research (01.11.2018)
Get full text
Journal Article
Loading…
Abstract 3898: Integrating structural variants and single nucleotide variants to uncover evolutionary trajectories in melanoma
Cui, Xiwen, Keskus, Ayse G., Malikic, Salem, Liu, Yuelin, Goretsky, Anton, Day, Chi-Ping, Mehrabadi, Farid R., Kolmogorov, Mikhail, Merlino, Glenn, Sahinalp, S. Cenk
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Get full text
Journal Article
Loading…
Abstract 7497: Nanopore sequencing of single-cell derived sublines provides insights into melanoma heterogeneity and evolution
Goretsky, Anton, Liu, Yuelin, Keskus, Ayse, Ahmad, Tanveer, Malikic, Salem, Merlino, Glenn, Day, Chi-Ping, Molloy, Erin, Sahinalp, S. Cenk, Kolmogorov, Mikhail
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Get full text
Journal Article