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100-My history of bornavirus infections hidden in vertebrate genomes
Kawasaki, Junna, Kojima, Shohei, Mukai, Yahiro, Tomonaga, Keizo, Horie, Masayuki
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2021)
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Endogenous retroviruses drive species-specific germline transcriptomes in mammals
Sakashita, Akihiko, Maezawa, So, Takahashi, Kazuki, Alavattam, Kris G., Yukawa, Masashi, Hu, Yueh-Chiang, Kojima, Shohei, Parrish, Nicholas F., Barski, Artem, Pavlicev, Mihaela, Namekawa, Satoshi H.
Published in Nature structural & molecular biology (01.10.2020)
Published in Nature structural & molecular biology (01.10.2020)
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A hominoid-specific endogenous retrovirus may have rewired the gene regulatory network shared between primordial germ cells and naïve pluripotent cells
Ito, Jumpei, Seita, Yasunari, Kojima, Shohei, Parrish, Nicholas F., Sasaki, Kotaro, Sato, Kei
Published in PLoS genetics (12.05.2022)
Published in PLoS genetics (12.05.2022)
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ADAR2 Is Involved in Self and Nonself Recognition of Borna Disease Virus Genomic RNA in the Nucleus
Yanai, Mako, Kojima, Shohei, Sakai, Madoka, Komorizono, Ryo, Tomonaga, Keizo, Makino, Akiko
Published in Journal of virology (28.02.2020)
Published in Journal of virology (28.02.2020)
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Effect of Spacer Length in Pyrene-Modified-Phenylboronic Acid Probe/CyD Complexes on Fluorescence-based Recognition of Monosaccharides in Aqueous Solution
TSUCHIDO, Yuji, KOJIMA, Shohei, SUGITA, Ko, FUJIWARA, Shoji, HASHIMOTO, Takeshi, HAYASHITA, Takashi
Published in Analytical Sciences (10.05.2021)
Published in Analytical Sciences (10.05.2021)
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Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk
Kojima, Shohei, Koyama, Satoshi, Ka, Mirei, Saito, Yuka, Parrish, Erica H., Endo, Mikiko, Takata, Sadaaki, Mizukoshi, Misaki, Hikino, Keiko, Takeda, Atsushi, Gelinas, Asami F., Heaton, Steven M., Koide, Rie, Kamada, Anselmo J., Noguchi, Michiya, Hamada, Michiaki, Kamatani, Yoichiro, Murakawa, Yasuhiro, Ishigaki, Kazuyoshi, Nakamura, Yukio, Ito, Kaoru, Terao, Chikashi, Momozawa, Yukihide, Parrish, Nicholas F.
Published in Nature genetics (01.06.2023)
Published in Nature genetics (01.06.2023)
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Variant spectrum of von Hippel–Lindau disease and its genomic heterogeneity in Japan
Tamura, Kenji, Kanazashi, Yuki, Kawada, Chiaki, Sekine, Yuya, Maejima, Kazuhiro, Ashida, Shingo, Karashima, Takashi, Kojima, Shohei, Parrish, Nickolas F, Kosugi, Shunichi, Terao, Chikashi, Sasagawa, Shota, Fujita, Masashi, Johnson, Todd A, Momozawa, Yukihide, Inoue, Keiji, Shuin, Taro, Nakagawa, Hidewaki
Published in Human molecular genetics (05.06.2023)
Published in Human molecular genetics (05.06.2023)
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Splicing-Dependent Subcellular Targeting of Borna Disease Virus Nucleoprotein Isoforms
Kojima, Shohei, Sato, Ryo, Yanai, Mako, Komatsu, Yumiko, Horie, Masayuki, Igarashi, Manabu, Tomonaga, Keizo
Published in Journal of virology (01.03.2019)
Published in Journal of virology (01.03.2019)
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Phylogenetic analysis of the promoter element 2 of paramyxo- and filoviruses
Ashida, Shoichi, Kojima, Shohei, Okura, Takashi, Kato, Fumihiro, Furuyama, Wakako, Urata, Shuzo, Matsumoto, Yusuke
Published in Microbiology spectrum (02.05.2024)
Published in Microbiology spectrum (02.05.2024)
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BUD23-TRMT112 interacts with the L protein of Borna disease virus and mediates the chromosomal tethering of viral ribonucleoproteins
Garcia, Bea Clarise B, Horie, Masayuki, Kojima, Shohei, Makino, Akiko, Tomonaga, Keizo
Published in Microbiology and immunology (01.11.2021)
Published in Microbiology and immunology (01.11.2021)
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Fetal cord plasma herpesviruses and preeclampsia: an observational cohort study
Häkkinen, Inka, Yazgeldi Gunaydin, Gamze, Pyöriä, Lari, Kojima, Shohei, Parrish, Nicholas, Perdomo, Maria F., Wedenoja, Juho, Hedman, Klaus, Heinonen, Seppo, Kajantie, Eero, Laivuori, Hannele, Kere, Juha, Katayama, Shintaro, Wedenoja, Satu
Published in Scientific reports (25.06.2024)
Published in Scientific reports (25.06.2024)
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Functional analysis of promoter element 2 within the viral polymerase gene of an emerging paramyxovirus, Sosuga virus
Akter, Lipi, Kawasaki, Junna, Rakib, Tofazzal Md, Okura, Takashi, Kato, Fumihiro, Kojima, Shohei, Oda, Kosuke, Matsumoto, Yusuke
Published in Microbiology spectrum (10.04.2025)
Published in Microbiology spectrum (10.04.2025)
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A comprehensive list of the Bunyavirales replication promoters reveals a unique promoter structure in Nairoviridae differing from other virus families
Neriya, Yutaro, Kojima, Shohei, Sakiyama, Arata, Kishimoto, Mai, Iketani, Takao, Watanabe, Tadashi, Abe, Yuichi, Shimoda, Hiroshi, Nakagawa, Keisuke, Koma, Takaaki, Matsumoto, Yusuke
Published in Scientific reports (09.08.2022)
Published in Scientific reports (09.08.2022)
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Wall teichoic acid-dependent phagocytosis of intact cell walls of Lactiplantibacillus plantarum elicits IL-12 secretion from macrophages
Kojima, Naoya, Kojima, Shohei, Hosokawa, Shin, Oda, Yoshiki, Zenke, Daisuke, Toura, Yuta, Onohara, Emi, Yokota, Shin-ichi, Nagaoka, Masato, Kuroda, Yasuhiro
Published in Frontiers in microbiology (09.08.2022)
Published in Frontiers in microbiology (09.08.2022)
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