CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set
REINHOLD, William C, SUNSHINE, Margot, HONGFANG LIU, VARMA, Sudhir, KOHN, Kurt W, MORRIS, Joel, DOROSHOW, James, POMMIER, Yves
Published in Cancer research (Chicago, Ill.) (15.07.2012)
Published in Cancer research (Chicago, Ill.) (15.07.2012)
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Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype
Kohn, Kurt W, Zeeberg, Barry M, Reinhold, William C, Pommier, Yves
Published in PloS one (18.06.2014)
Published in PloS one (18.06.2014)
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SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures
Tlemsani, Camille, Pongor, Lorinc, Elloumi, Fathi, Girard, Luc, Huffman, Kenneth E., Roper, Nitin, Varma, Sudhir, Luna, Augustin, Rajapakse, Vinodh N., Sebastian, Robin, Kohn, Kurt W., Krushkal, Julia, Aladjem, Mirit I., Teicher, Beverly A., Meltzer, Paul S., Reinhold, William C., Minna, John D., Thomas, Anish, Pommier, Yves
Published in Cell reports (Cambridge) (20.10.2020)
Published in Cell reports (Cambridge) (20.10.2020)
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Ataxia telangiectasia mutated activation by transcription- and topoisomerase I-induced DNA double-strand breaks
Sordet, Olivier, Redon, Christophe E, Guirouilh-Barbat, Josée, Smith, Susan, Solier, Stéphanie, Douarre, Céline, Conti, Chiara, Nakamura, Asako J, Das, Benu B, Nicolas, Estelle, Kohn, Kurt W, Bonner, William M, Pommier, Yves
Published in EMBO reports (01.08.2009)
Published in EMBO reports (01.08.2009)
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Heat shock protein 90α (HSP90α), a substrate and chaperone of DNA-PK necessary for the apoptotic response
Solier, Stéphanie, Kohn, Kurt W, Scroggins, Bradley, Xu, Wanping, Trepel, Jane, Neckers, Leonard, Pommier, Yves
Published in Proceedings of the National Academy of Sciences - PNAS (07.08.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (07.08.2012)
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CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines
Rajapakse, Vinodh N, Luna, Augustin, Yamade, Mihoko, Loman, Lisa, Varma, Sudhir, Sunshine, Margot, Iorio, Francesco, Sousa, Fabricio G, Elloumi, Fathi, Aladjem, Mirit I, Thomas, Anish, Sander, Chris, Kohn, Kurt W, Benes, Cyril H, Garnett, Mathew, Reinhold, William C, Pommier, Yves
Published in iScience (21.12.2018)
Published in iScience (21.12.2018)
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Journal Article
Apoptosis defects and chemotherapy resistance: molecular interaction maps and networks
Pommier, Yves, Sordet, Olivier, Antony, Smitha, Hayward, Richard L, Kohn, Kurt W
Published in Oncogene (12.04.2004)
Published in Oncogene (12.04.2004)
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Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response
Luna, Augustin, McFadden, Geoffrey B, Aladjem, Mirit I, Kohn, Kurt W
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
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Journal Article
NCI-60 whole exome sequencing and pharmacological CellMiner analyses
Reinhold, William C, Varma, Sudhir, Sousa, Fabricio, Sunshine, Margot, Abaan, Ogan D, Davis, Sean R, Reinhold, Spencer W, Kohn, Kurt W, Morris, Joel, Meltzer, Paul S, Doroshow, James H, Pommier, Yves
Published in PloS one (17.07.2014)
Published in PloS one (17.07.2014)
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Journal Article
The NCI-60 Methylome and Its Integration into CellMiner
Reinhold, William C, Varma, Sudhir, Sunshine, Margot, Rajapakse, Vinodh, Luna, Augustin, Kohn, Kurt W, Stevenson, Holly, Wang, Yonghong, Heyn, Holger, Nogales, Vanesa, Moran, Sebastian, Goldstein, David J, Doroshow, James H, Meltzer, Paul S, Esteller, Manel, Pommier, Yves
Published in Cancer research (Chicago, Ill.) (01.02.2017)
Published in Cancer research (Chicago, Ill.) (01.02.2017)
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Journal Article
mRNA and microRNA expression profiles of the NCI-60 integrated with drug activities
Liu, Hongfang, D'Andrade, Petula, Fulmer-Smentek, Stephanie, Lorenzi, Philip, Kohn, Kurt W, Weinstein, John N, Pommier, Yves, Reinhold, William C
Published in Molecular cancer therapeutics (01.05.2010)
Published in Molecular cancer therapeutics (01.05.2010)
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Journal Article
Transcription Poisoning by Topoisomerase I Is Controlled by Gene Length, Splice Sites, and miR-142-3p
SOLIER, Stéphanie, RYAN, Michael C, MARTIN, Scott E, VARMA, Sudhir, KOHN, Kurt W, HONGFANG LIU, ZEEBERG, Barry R, POMMIER, Yves
Published in Cancer research (Chicago, Ill.) (01.08.2013)
Published in Cancer research (Chicago, Ill.) (01.08.2013)
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Journal Article
Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes
Kohn, Kurt W, Zeeberg, Barry R, Reinhold, William C, Sunshine, Margot, Luna, Augustin, Pommier, Yves
Published in PloS one (03.05.2012)
Published in PloS one (03.05.2012)
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Journal Article
A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
Luna, Augustin, Karac, Evrim I, Sunshine, Margot, Chang, Lucas, Nussinov, Ruth, Aladjem, Mirit I, Kohn, Kurt W
Published in BMC bioinformatics (17.05.2011)
Published in BMC bioinformatics (17.05.2011)
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Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples
Zeeberg, Barry R, Kohn, Kurt W, Kahn, Ari, Larionov, Vladimir, Weinstein, John N, Reinhold, William, Pommier, Yves
Published in PloS one (26.07.2012)
Published in PloS one (26.07.2012)
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Journal Article
Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors
SOLIER, Stéphanie, BARB, Jennifer, ZEEBERG, Barry R, VARMA, Sudhir, RYAN, Mike C, KOHN, Kurt W, WEINSTEIN, John N, MUNSON, Peter J, POMMIER, Yves
Published in Cancer research (Chicago, Ill.) (15.10.2010)
Published in Cancer research (Chicago, Ill.) (15.10.2010)
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Using drug response data to identify molecular effectors, and molecular “omic” data to identify candidate drugs in cancer
Reinhold, William C., Varma, Sudhir, Rajapakse, Vinodh N., Luna, Augustin, Sousa, Fabricio Garmus, Kohn, Kurt W., Pommier, Yves G.
Published in Human genetics (01.01.2015)
Published in Human genetics (01.01.2015)
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