Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Kajitani, Rei, Yoshimura, Dai, Okuno, Miki, Minakuchi, Yohei, Kagoshima, Hiroshi, Fujiyama, Asao, Kubokawa, Kaoru, Kohara, Yuji, Toyoda, Atsushi, Itoh, Takehiko
Published in Nature communications (12.04.2019)
Published in Nature communications (12.04.2019)
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A small RNA system ensures accurate homologous pairing and unpaired silencing of meiotic chromosomes
Tabara, Hiroaki, Mitani, Shohei, Mochizuki, Megumi, Kohara, Yuji, Nagata, Kyosuke
Published in The EMBO journal (01.06.2023)
Published in The EMBO journal (01.06.2023)
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The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization
Nishiyama, Tomoaki, Sakayama, Hidetoshi, de Vries, Jan, Buschmann, Henrik, Saint-Marcoux, Denis, Ullrich, Kristian K., Haas, Fabian B., Vanderstraeten, Lisa, Becker, Dirk, Lang, Daniel, Vosolsobě, Stanislav, Rombauts, Stephane, Wilhelmsson, Per K.I., Janitza, Philipp, Kern, Ramona, Heyl, Alexander, Rümpler, Florian, Villalobos, Luz Irina A. Calderón, Clay, John M., Skokan, Roman, Toyoda, Atsushi, Suzuki, Yutaka, Kagoshima, Hiroshi, Schijlen, Elio, Tajeshwar, Navindra, Catarino, Bruno, Hetherington, Alexander J., Saltykova, Assia, Bonnot, Clemence, Breuninger, Holger, Symeonidi, Aikaterini, Radhakrishnan, Guru V., Van Nieuwerburgh, Filip, Deforce, Dieter, Chang, Caren, Karol, Kenneth G., Hedrich, Rainer, Ulvskov, Peter, Glöckner, Gernot, Delwiche, Charles F., Petrášek, Jan, Van de Peer, Yves, Friml, Jiri, Beilby, Mary, Dolan, Liam, Kohara, Yuji, Sugano, Sumio, Fujiyama, Asao, Delaux, Pierre-Marc, Quint, Marcel, Theißen, Günter, Hagemann, Martin, Harholt, Jesper, Dunand, Christophe, Zachgo, Sabine, Langdale, Jane, Maumus, Florian, Van Der Straeten, Dominique, Gould, Sven B., Rensing, Stefan A.
Published in Cell (12.07.2018)
Published in Cell (12.07.2018)
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Kajitani, Rei, Toshimoto, Kouta, Noguchi, Hideki, Toyoda, Atsushi, Ogura, Yoshitoshi, Okuno, Miki, Yabana, Mitsuru, Harada, Masayuki, Nagayasu, Eiji, Maruyama, Haruhiko, Kohara, Yuji, Fujiyama, Asao, Hayashi, Tetsuya, Itoh, Takehiko
Published in Genome research (01.08.2014)
Published in Genome research (01.08.2014)
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Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena
Takehana, Yusuke, Matsuda, Masaru, Myosho, Taijun, Suster, Maximiliano L, Kawakami, Koichi, Shin-I, Tadasu, Kohara, Yuji, Kuroki, Yoko, Toyoda, Atsushi, Fujiyama, Asao, Hamaguchi, Satoshi, Sakaizumi, Mitsuru, Naruse, Kiyoshi
Published in Nature communications (20.06.2014)
Published in Nature communications (20.06.2014)
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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein
Hashimoto, Takuma, Horikawa, Daiki D, Saito, Yuki, Kuwahara, Hirokazu, Kozuka-Hata, Hiroko, Shin-I, Tadasu, Minakuchi, Yohei, Ohishi, Kazuko, Motoyama, Ayuko, Aizu, Tomoyuki, Enomoto, Atsushi, Kondo, Koyuki, Tanaka, Sae, Hara, Yuichiro, Koshikawa, Shigeyuki, Sagara, Hiroshi, Miura, Toru, Yokobori, Shin-Ichi, Miyagawa, Kiyoshi, Suzuki, Yutaka, Kubo, Takeo, Oyama, Masaaki, Kohara, Yuji, Fujiyama, Asao, Arakawa, Kazuharu, Katayama, Toshiaki, Toyoda, Atsushi, Kunieda, Takekazu
Published in Nature communications (20.09.2016)
Published in Nature communications (20.09.2016)
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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
Watanabe, Toshiaki, Sasaki, Hiroyuki, Totoki, Yasushi, Toyoda, Atsushi, Kaneda, Masahiro, Kuramochi-Miyagawa, Satomi, Obata, Yayoi, Chiba, Hatsune, Kohara, Yuji, Kono, Tomohiro, Nakano, Toru, Surani, M. Azim, Sakaki, Yoshiyuki
Published in Nature (22.05.2008)
Published in Nature (22.05.2008)
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Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
Kato, Yuzuru, Kaneda, Masahiro, Hata, Kenichiro, Kumaki, Kenji, Hisano, Mizue, Kohara, Yuji, Okano, Masaki, Li, En, Nozaki, Masami, Sasaki, Hiroyuki
Published in Human molecular genetics (01.10.2007)
Published in Human molecular genetics (01.10.2007)
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Journal Article
Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Hoshino, Atsushi, Jayakumar, Vasanthan, Nitasaka, Eiji, Toyoda, Atsushi, Noguchi, Hideki, Itoh, Takehiko, Shin-I, Tadasu, Minakuchi, Yohei, Koda, Yuki, Nagano, Atsushi J, Yasugi, Masaki, Honjo, Mie N, Kudoh, Hiroshi, Seki, Motoaki, Kamiya, Asako, Shiraki, Toshiyuki, Carninci, Piero, Asamizu, Erika, Nishide, Hiroyo, Tanaka, Sachiko, Park, Kyeung-Il, Morita, Yasumasa, Yokoyama, Kohei, Uchiyama, Ikuo, Tanaka, Yoshikazu, Tabata, Satoshi, Shinozaki, Kazuo, Hayashizaki, Yoshihide, Kohara, Yuji, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Iida, Shigeru, Sakakibara, Yasubumi
Published in Nature communications (08.11.2016)
Published in Nature communications (08.11.2016)
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The amphioxus genome and the evolution of the chordate karyotype
Satoh, Nori, Rokhsar, Daniel S, Putnam, Nicholas H, Butts, Thomas, Ferrier, David E. K, Furlong, Rebecca F, Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutiérrez, E lia, Dubchak, Inna, Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J, Grigoriev, Igor V, Horton, Amy C, de Jong, Pieter J, Jurka, Jerzy, Kapitonov, Vladimir V, Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A, Salamov, Asaf A, Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z, Holland, Peter W. H
Published in Nature (19.06.2008)
Published in Nature (19.06.2008)
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Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics
Aoki, Koh, Yano, Kentaro, Suzuki, Ayako, Kawamura, Shingo, Sakurai, Nozomu, Suda, Kunihiro, Kurabayashi, Atsushi, Suzuki, Tatsuya, Tsugane, Taneaki, Watanabe, Manabu, Ooga, Kazuhide, Torii, Maiko, Narita, Takanori, Shin-I, Tadasu, Kohara, Yuji, Yamamoto, Naoki, Takahashi, Hideki, Watanabe, Yuichiro, Egusa, Mayumi, Kodama, Motoichiro, Ichinose, Yuki, Kikuchi, Mari, Fukushima, Sumire, Okabe, Akiko, Arie, Tsutomu, Sato, Yuko, Yazawa, Katsumi, Satoh, Shinobu, Omura, Toshikazu, Ezura, Hiroshi, Shibata, Daisuke
Published in BMC genomics (30.03.2010)
Published in BMC genomics (30.03.2010)
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Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction
Hiraki, Hideaki, Kagoshima, Hiroshi, Kraus, Christopher, Schiffer, Philipp H, Ueta, Yumiko, Kroiher, Michael, Schierenberg, Einhard, Kohara, Yuji
Published in BMC genomics (24.06.2017)
Published in BMC genomics (24.06.2017)
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Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ‐deficient cells
Shiomi, Daisuke, Toyoda, Atsushi, Aizu, Tomoyuki, Ejima, Fumio, Fujiyama, Asao, Shini, Tadasu, Kohara, Yuji, Niki, Hironori
Published in Molecular microbiology (01.03.2013)
Published in Molecular microbiology (01.03.2013)
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The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains
Takada, Toyoyuki, Ebata, Toshinobu, Noguchi, Hideki, Keane, Thomas M, Adams, David J, Narita, Takanori, Shin-I, Tadasu, Fujisawa, Hironori, Toyoda, Atsushi, Abe, Kuniya, Obata, Yuichi, Sakaki, Yoshiyuki, Moriwaki, Kazuo, Fujiyama, Asao, Kohara, Yuji, Shiroishi, Toshihiko
Published in Genome research (01.08.2013)
Published in Genome research (01.08.2013)
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Axial patterning in cephalochordates and the evolution of the organizer
Shin-I, Tadasu, Holland, Linda Z, Holland, Nicholas D, Kohara, Yuji, Satou, Yutaka, Bronner-Fraser, Marianne, Yu, Jr-Kai, Satoh, Noriyuki
Published in Nature (08.02.2007)
Published in Nature (08.02.2007)
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Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE
Wang, Xin, Zhao, Yongjun, Wong, Kim, Ehlers, Peter, Kohara, Yuji, Jones, Steven J, Marra, Marco A, Holt, Robert A, Moerman, Donald G, Hansen, Dave
Published in BMC genomics (09.05.2009)
Published in BMC genomics (09.05.2009)
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