Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants
Sellitto, Maria, Bai, Guoyun, Serena, Gloria, Fricke, W Florian, Sturgeon, Craig, Gajer, Pawel, White, James R, Koenig, Sara S K, Sakamoto, Joyce, Boothe, Dustin, Gicquelais, Rachel, Kryszak, Deborah, Puppa, Elaine, Catassi, Carlo, Ravel, Jacques, Fasano, Alessio
Published in PloS one (14.03.2012)
Published in PloS one (14.03.2012)
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Journal Article
Genome Sequences of the Biotechnologically Important Bacillus megaterium Strains QM B1551 and DSM319
EPPINGER, Mark, BUNK, Boyke, MARTIN, Madeleine, ELBOURNE, Liam D. H, PAULSEN, Ian, BIEDENDIECK, Rebekka, BRAUN, Christopher, GRAYBURN, Scott, DHINGRA, Sourabh, LUKYANCHUK, Vitaliy, BALL, Barbara, UL-QAMAR, Riaz, JOHNS, Mitrick A, SEIBEL, Jürgen, BREMER, Erhard, JAHN, Dieter, RAVEL, Jacques, VARY, Patricia S, EDIRISINGHE, Janaka N, KUTUMBAKA, Kirthi K, KOENIG, Sara S. K, HUOT CREASY, Heather, ROSOVITZ, M. J, RILEY, David R, DAUGHERTY, Sean
Published in Journal of Bacteriology (01.08.2011)
Published in Journal of Bacteriology (01.08.2011)
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Journal Article
Comparison of Self-Collected and Physician-Collected Vaginal Swabs for Microbiome Analysis
Forney, Larry J, Gajer, Pawel, Williams, Christopher J, Schneider, G. Maria, Koenig, Sara S.K, McCulle, Stacey L, Karlebach, Shara, Brotman, Rebecca M, Davis, Catherine C, Ault, Kevin, Ravel, Jacques
Published in Journal of Clinical Microbiology (01.05.2010)
Published in Journal of Clinical Microbiology (01.05.2010)
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Journal Article
Vaginal microbiome of reproductive-age women
Ravel, Jacques, Gajer, Pawel, Abdo, Zaid, Schneider, G. Maria, Koenig, Sara S.K, McCulle, Stacey L, Karlebach, Shara, Gorle, Reshma, Russell, Jennifer, Tacket, Carol O, Brotman, Rebecca M, Davis, Catherine C, Ault, Kevin, Peralta, Ligia, Forney, Larry J
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
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Journal Article
Closed Genome Sequence of Vibrio cholerae O1 El Tor Inaba Strain A1552
Allué-Guardia, Anna, Echazarreta, Mylea, Koenig, Sara S K, Klose, Karl E, Eppinger, Mark
Published in Genome announcements (Washington, DC) (01.03.2018)
Published in Genome announcements (Washington, DC) (01.03.2018)
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Journal Article
Temporal dynamics of the human vaginal microbiota
Gajer, Pawel, Brotman, Rebecca M, Bai, Guoyun, Sakamoto, Joyce, Schütte, Ursel M E, Zhong, Xue, Koenig, Sara S K, Fu, Li, Ma, Zhanshan Sam, Zhou, Xia, Abdo, Zaid, Forney, Larry J, Ravel, Jacques
Published in Science translational medicine (02.05.2012)
Published in Science translational medicine (02.05.2012)
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Journal Article
Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic
Eppinger, Mark, Pearson, Talima, Koenig, Sara S K, Pearson, Ofori, Hicks, Nathan, Agrawal, Sonia, Sanjar, Fatemeh, Galens, Kevin, Daugherty, Sean, Crabtree, Jonathan, Hendriksen, Rene S, Price, Lance B, Upadhyay, Bishnu P, Shakya, Geeta, Fraser, Claire M, Ravel, Jacques, Keim, Paul S
Published in mBio (04.11.2014)
Published in mBio (04.11.2014)
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Journal Article
Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes
Nyong, Emmanuel C, Zaia, Sam R, Allué-Guardia, Anna, Rodriguez, Armando L, Irion-Byrd, Zaina, Koenig, Sara S K, Feng, Peter, Bono, James L, Eppinger, Mark
Published in Frontiers in microbiology (15.04.2020)
Published in Frontiers in microbiology (15.04.2020)
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Journal Article
Pathogenomes of Shiga Toxin Positive and Negative Escherichia coli O157:H7 Strains TT12A and TT12B: Comprehensive Phylogenomic Analysis Using Closed Genomes
Kalalah, Anwar A, Koenig, Sara S K, Feng, Peter, Bosilevac, Joseph M, Bono, James L, Eppinger, Mark
Published in Microorganisms (Basel) (29.03.2024)
Published in Microorganisms (Basel) (29.03.2024)
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Journal Article
Pathogenome comparison and global phylogeny of Escherichia coli ST1485 strains
Hammad, Ahmed M, Gonzalez-Escalona, Narjol, El Tahan, Amira, Abbas, Nasser H, Koenig, Sara S K, Allué-Guardia, Anna, Eppinger, Mark, Hoffmann, Maria
Published in Scientific reports (02.11.2022)
Published in Scientific reports (02.11.2022)
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Journal Article
Pathogenomes and variations in Shiga toxin production among geographically distinct clones of Escherichia coli O113:H21
Allué-Guardia, Anna, Koenig, Sara S K, Martinez, Ricardo A, Rodriguez, Armando L, Bosilevac, Joseph M, Feng, Peter, Eppinger, Mark
Published in Microbial genomics (01.04.2022)
Published in Microbial genomics (01.04.2022)
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Journal Article
Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis
Ravel, Jacques, Brotman, Rebecca M, Gajer, Pawel, Ma, Bing, Nandy, Melissa, Fadrosh, Douglas W, Sakamoto, Joyce, Koenig, Sara Sk, Fu, Li, Zhou, Xia, Hickey, Roxana J, Schwebke, Jane R, Forney, Larry J
Published in Microbiome (02.12.2013)
Published in Microbiome (02.12.2013)
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Journal Article
Twice-Daily Application of HIV Microbicides Alters the Vaginal Microbiota
Ravel, Jacques, Gajer, Pawel, Fu, Li, Mauck, Christine K., Koenig, Sara S. K., Sakamoto, Joyce, Motsinger-Reif, Alison A., Doncel, Gustavo F., Zeichner, Steven L.
Published in mBio (31.12.2012)
Published in mBio (31.12.2012)
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Journal Article
Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes
Sanjar, Fatemeh, Rusconi, Brigida, Hazen, Tracy H., Koenig, Sara S.K., Mammel, Mark K., Feng, Peter C.H., Rasko, David A., Eppinger, Mark
Published in Pathogens and disease (01.07.2015)
Published in Pathogens and disease (01.07.2015)
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Journal Article
Closed Genome Sequence of Escherichia coli K-12 Group Strain C600
Allué-Guardia, Anna, Nyong, Emmanuel C, Koenig, Sara S K, Vargas, Sean M, Bono, James L, Eppinger, Mark
Published in Microbiology resource announcements (10.01.2019)
Published in Microbiology resource announcements (10.01.2019)
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Journal Article