Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains
te Molder, Dennie, Poncheewin, Wasin, Schaap, Peter J, Koehorst, Jasper J
Published in BMC genomics (23.11.2021)
Published in BMC genomics (23.11.2021)
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Journal Article
NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis
Poncheewin, Wasin, Hermes, Gerben D A, van Dam, Jesse C J, Koehorst, Jasper J, Smidt, Hauke, Schaap, Peter J
Published in Frontiers in genetics (23.01.2020)
Published in Frontiers in genetics (23.01.2020)
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Journal Article
Reverse Methanogenesis and Respiration in Methanotrophic Archaea
Jetten, Mike S. M., Plugge, Caroline M., Koehorst, Jasper J., Welte, Cornelia U., Timmers, Peer H. A., Stams, Alfons J. M.
Published in Archaea (01.01.2017)
Published in Archaea (01.01.2017)
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Journal Article
A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes
Uengwetwanit, Tanaporn, Pootakham, Wirulda, Nookaew, Intawat, Sonthirod, Chutima, Angthong, Pacharaporn, Sittikankaew, Kanchana, Rungrassamee, Wanilada, Arayamethakorn, Sopacha, Wongsurawat, Thidathip, Jenjaroenpun, Piroon, Sangsrakru, Duangjai, Leelatanawit, Rungnapa, Khudet, Jutatip, Koehorst, Jasper J., Schaap, Peter J., Martins dos Santos, Vitor, Tangy, Frédéric, Karoonuthaisiri, Nitsara
Published in Molecular ecology resources (01.07.2021)
Published in Molecular ecology resources (01.07.2021)
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Journal Article
Effects of Argonaute on Gene Expression in Thermus thermophilus
Swarts, Daan C, Koehorst, Jasper J, Westra, Edze R, Schaap, Peter J, van der Oost, John
Published in PloS one (22.04.2015)
Published in PloS one (22.04.2015)
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Journal Article
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
Worm, Petra, Koehorst, Jasper J, Visser, Michael, Sedano-Núñez, Vicente T, Schaap, Peter J, Plugge, Caroline M, Sousa, Diana Z, Stams, Alfons J M
Published in Biochimica et biophysica acta (01.12.2014)
Published in Biochimica et biophysica acta (01.12.2014)
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Journal Article
Genomic convergence between Akkermansia muciniphila in different mammalian hosts
Geerlings, Sharon Y, Ouwerkerk, Janneke P, Koehorst, Jasper J, Ritari, Jarmo, Aalvink, Steven, Stecher, Bärbel, Schaap, Peter J, Paulin, Lars, de Vos, Willem M, Belzer, Clara
Published in BMC microbiology (29.10.2021)
Published in BMC microbiology (29.10.2021)
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Journal Article
Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Waagmeester, Andra, Willighagen, Egon L, Su, Andrew I, Kutmon, Martina, Gayo, Jose Emilio Labra, Fernández-Ãlvarez, Daniel, Groom, Quentin, Schaap, Peter J, Verhagen, Lisa M, Koehorst, Jasper J
Published in BMC biology (16.11.2023)
Published in BMC biology (16.11.2023)
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Journal Article
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Waagmeester, Andra, Willighagen, Egon L, Su, Andrew I, Kutmon, Martina, Gayo, Jose Emilio Labra, Fernández-Álvarez, Daniel, Groom, Quentin, Schaap, Peter J, Verhagen, Lisa M, Koehorst, Jasper J
Published in BMC biology (22.01.2021)
Published in BMC biology (22.01.2021)
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Journal Article
Organohalide-respiring Desulfoluna species isolated from marine environments
Peng, Peng, Goris, Tobias, Lu, Yue, Nijsse, Bart, Burrichter, Anna, Schleheck, David, Koehorst, Jasper J, Liu, Jie, Sipkema, Detmer, Sinninghe Damste, Jaap S, Stams, Alfons J M, Häggblom, Max M, Smidt, Hauke, Atashgahi, Siavash
Published in The ISME Journal (01.03.2020)
Published in The ISME Journal (01.03.2020)
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Journal Article
SALARECON connects the Atlantic salmon genome to growth and feed efficiency
Zakhartsev, Maksim, Rotnes, Filip, Gulla, Marie, Øyås, Ove, van Dam, Jesse C J, Suarez-Diez, Maria, Grammes, Fabian, Hafþórsson, Róbert Anton, van Helvoirt, Wout, Koehorst, Jasper J, Schaap, Peter J, Jin, Yang, Mydland, Liv Torunn, Gjuvsland, Arne B, Sandve, Simen R, Martins Dos Santos, Vitor A P, Vik, Jon Olav
Published in PLoS computational biology (01.06.2022)
Published in PLoS computational biology (01.06.2022)
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Journal Article
Differential translation tunes uneven production of operon-encoded proteins
Quax, Tessa E F, Wolf, Yuri I, Koehorst, Jasper J, Wurtzel, Omri, van der Oost, Richard, Ran, Wenqi, Blombach, Fabian, Makarova, Kira S, Brouns, Stan J J, Forster, Anthony C, Wagner, E Gerhart H, Sorek, Rotem, Koonin, Eugene V, van der Oost, John
Published in Cell reports (Cambridge) (01.09.2013)
Published in Cell reports (Cambridge) (01.09.2013)
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Journal Article
Comparative Genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
Fiebig, Anne, Loof, Torsten G, Babbar, Anshu, Itzek, Andreas, Koehorst, Jasper J, Schaap, Peter J, Nitsche-Schmitz, D. Patric
Published in International journal of medical microbiology (01.09.2015)
Published in International journal of medical microbiology (01.09.2015)
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Journal Article
Assembly and Comparison of Ca. Neoehrlichia mikurensis Genomes
Azagi, Tal, Dirks, Ron P., Yebra-Pimentel, Elena S., Schaap, Peter J., Koehorst, Jasper J., Esser, Helen J., Sprong, Hein
Published in Microorganisms (Basel) (31.05.2022)
Published in Microorganisms (Basel) (31.05.2022)
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Journal Article
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View
Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J, Martins dos Santos, Vitor A P, Schaap, Peter J
Published in PloS one (14.09.2015)
Published in PloS one (14.09.2015)
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Journal Article
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
Koehorst, Jasper J., Saccenti, Edoardo, Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Published in F1000 research (2017)
Published in F1000 research (2017)
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Journal Article
RNA Targeting by the Type III-A CRISPR-Cas Csm Complex of Thermus thermophilus
Staals, Raymond H.J., Zhu, Yifan, Taylor, David W., Kornfeld, Jack E., Sharma, Kundan, Barendregt, Arjan, Koehorst, Jasper J., Vlot, Marnix, Neupane, Nirajan, Varossieau, Koen, Sakamoto, Keiko, Suzuki, Takehiro, Dohmae, Naoshi, Yokoyama, Shigeyuki, Schaap, Peter J., Urlaub, Henning, Heck, Albert J.R., Nogales, Eva, Doudna, Jennifer A., Shinkai, Akeo, van der Oost, John
Published in Molecular cell (20.11.2014)
Published in Molecular cell (20.11.2014)
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Journal Article
Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas
Diender, Martijn, Parera Olm, Ivette, Gelderloos, Marten, Koehorst, Jasper J, Schaap, Peter J, Stams, Alfons J M, Sousa, Diana Z
Published in Scientific reports (02.12.2019)
Published in Scientific reports (02.12.2019)
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Journal Article