RNA Targeting by the Type III-A CRISPR-Cas Csm Complex of Thermus thermophilus
Staals, Raymond H.J., Zhu, Yifan, Taylor, David W., Kornfeld, Jack E., Sharma, Kundan, Barendregt, Arjan, Koehorst, Jasper J., Vlot, Marnix, Neupane, Nirajan, Varossieau, Koen, Sakamoto, Keiko, Suzuki, Takehiro, Dohmae, Naoshi, Yokoyama, Shigeyuki, Schaap, Peter J., Urlaub, Henning, Heck, Albert J.R., Nogales, Eva, Doudna, Jennifer A., Shinkai, Akeo, van der Oost, John
Published in Molecular cell (20.11.2014)
Published in Molecular cell (20.11.2014)
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Journal Article
Structure and Activity of the RNA-Targeting Type III-B CRISPR-Cas Complex of Thermus thermophilus
Staals, Raymond H.J., Agari, Yoshihiro, Maki-Yonekura, Saori, Zhu, Yifan, Taylor, David W., van Duijn, Esther, Barendregt, Arjan, Vlot, Marnix, Koehorst, Jasper J., Sakamoto, Keiko, Masuda, Akiko, Dohmae, Naoshi, Schaap, Peter J., Doudna, Jennifer A., Heck, Albert J.R., Yonekura, Koji, van der Oost, John, Shinkai, Akeo
Published in Molecular cell (10.10.2013)
Published in Molecular cell (10.10.2013)
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Journal Article
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
Worm, Petra, Koehorst, Jasper J, Visser, Michael, Sedano-Núñez, Vicente T, Schaap, Peter J, Plugge, Caroline M, Sousa, Diana Z, Stams, Alfons J M
Published in Biochimica et biophysica acta (01.12.2014)
Published in Biochimica et biophysica acta (01.12.2014)
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Journal Article
Effects of Argonaute on Gene Expression in Thermus thermophilus
Swarts, Daan C, Koehorst, Jasper J, Westra, Edze R, Schaap, Peter J, van der Oost, John
Published in PloS one (22.04.2015)
Published in PloS one (22.04.2015)
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Journal Article
Comparative Genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
Fiebig, Anne, Loof, Torsten G, Babbar, Anshu, Itzek, Andreas, Koehorst, Jasper J, Schaap, Peter J, Nitsche-Schmitz, D. Patric
Published in International journal of medical microbiology (01.09.2015)
Published in International journal of medical microbiology (01.09.2015)
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Journal Article
Differential translation tunes uneven production of operon-encoded proteins
Quax, Tessa E F, Wolf, Yuri I, Koehorst, Jasper J, Wurtzel, Omri, van der Oost, Richard, Ran, Wenqi, Blombach, Fabian, Makarova, Kira S, Brouns, Stan J J, Forster, Anthony C, Wagner, E Gerhart H, Sorek, Rotem, Koonin, Eugene V, van der Oost, John
Published in Cell reports (Cambridge) (01.09.2013)
Published in Cell reports (Cambridge) (01.09.2013)
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Journal Article
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View
Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J, Martins dos Santos, Vitor A P, Schaap, Peter J
Published in PloS one (14.09.2015)
Published in PloS one (14.09.2015)
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Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor
Mehboob, Farrakh, Oosterkamp, Margreet J., Koehorst, Jasper J., Farrakh, Sumaira, Veuskens, Teun, Plugge, Caroline M., Boeren, Sjef, de Vos, Willem M., Schraa, Gosse, Stams, Alfons J.M., Schaap, Peter J.
Published in Environmental microbiology (01.10.2016)
Published in Environmental microbiology (01.10.2016)
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Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
Koehorst, Jasper J, Saccenti, Edoardo, Schaap, Peter J, Martins Dos Santos, Vitor A P, Suarez-Diez, Maria
Published in F1000 research (2016)
Published in F1000 research (2016)
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The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts
Hesselman, Matthijn C, Koehorst, Jasper J, Slijkhuis, Thijs, Odoni, Dorett I, Hugenholtz, Floor, van Passel, Mark W J
Published in Journal of biological engineering (04.09.2012)
Published in Journal of biological engineering (04.09.2012)
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
Visser, Michael, Parshina, Sofiya N, Alves, Joana I, Sousa, Diana Z, Pereira, Inês A C, Muyzer, Gerard, Kuever, Jan, Lebedinsky, Alexander V, Koehorst, Jasper J, Worm, Petra, Plugge, Caroline M, Schaap, Peter J, Goodwin, Lynne A, Lapidus, Alla, Kyrpides, Nikos C, Detter, Janine C, Woyke, Tanja, Chain, Patrick, Davenport, Karen W, Spring, Stefan, Rohde, Manfred, Klenk, Hans Peter, Stams, Alfons J M
Published in Standards in genomic sciences (15.06.2014)
Published in Standards in genomic sciences (15.06.2014)
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Journal Article
ASSIsT: an automatic SNP scoring tool for in- and outbreeding species
Di Guardo, Mario, Micheletti, Diego, Bianco, Luca, Koehorst-van Putten, Herma J J, Longhi, Sara, Costa, Fabrizio, Aranzana, Maria J, Velasco, Riccardo, Arús, Pere, Troggio, Michela, van de Weg, Eric W
Published in Bioinformatics (Oxford, England) (01.12.2015)
Published in Bioinformatics (Oxford, England) (01.12.2015)
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Journal Article
A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species
Di Pierro, Erica A, Gianfranceschi, Luca, Di Guardo, Mario, Koehorst-van Putten, Herma Jj, Kruisselbrink, Johannes W, Longhi, Sara, Troggio, Michela, Bianco, Luca, Muranty, Hélène, Pagliarani, Giulia, Tartarini, Stefano, Letschka, Thomas, Lozano Luis, Lidia, Garkava-Gustavsson, Larisa, Micheletti, Diego, Bink, Marco Cam, Voorrips, Roeland E, Aziz, Ebrahimi, Velasco, Riccardo, Laurens, François, van de Weg, W Eric
Published in Horticulture research (23.11.2016)
Published in Horticulture research (23.11.2016)
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Diversity arrays technology (DArT) markers in apple for genetic linkage maps
Schouten, Henk J., van de Weg, W. Eric, Carling, Jason, Khan, Sabaz Ali, McKay, Steven J., van Kaauwen, Martijn P. W., Wittenberg, Alexander H. J., Koehorst-van Putten, Herma J. J., Noordijk, Yolanda, Gao, Zhongshan, Rees, D. Jasper G., Van Dyk, Maria M., Jaccoud, Damian, Considine, Michael J., Kilian, Andrzej
Published in Molecular breeding (01.03.2012)
Published in Molecular breeding (01.03.2012)
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Journal Article
Field testing and exploitation of genetically modified cassava with low-amylose or amylose-free starch in Indonesia
Koehorst-van Putten, H. J. J, Sudarmonowati, E, Herman, M, Pereira-Bertram, I. J, Wolters, A. M. A, Meima, H, de Vetten, N, Raemakers, C. J. J. M, Visser, R. G. F
Published in Transgenic research (01.02.2012)
Published in Transgenic research (01.02.2012)
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Journal Article
Cloning and characterization of a tuberous root-specific promoter from cassava (Manihot esculenta Crantz)
Koehorst-van Putten, Herma J. J., Wolters, Anne-Marie A., Pereira-Bertram, Isolde M., van den Berg, Hans H. J., van der Krol, Alexander R., Visser, Richard G. F.
Published in Planta (01.12.2012)
Published in Planta (01.12.2012)
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