Genome Project Standards in a New Era of Sequencing
Chain, P. S. G., Grafham, D. V., Fulton, R. S., FitzGerald, M. G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D. C., Buhay, C., Cole, J. R., Ding, Y., Dugan, S., Field, D., Garrity, G. M., Gibbs, R., Graves, T., Han, C. S., Harrison, S. H., Highlander, S., Hugenholtz, P., Khouri, H. M., Kodira, C. D., Kolker, E., Kyrpides, N. C., Lang, D., Lapidus, A., Malfatti, S. A., Markowitz, V., Metha, T., Nelson, K. E., Parkhill, J., Pitluck, S., Qin, X., Read, T. D., Schmutz, J., Sozhamannan, S., Sterk, P., Strausberg, R. L., Sutton, G., Thomson, N. R., Tiedje, J. M., Weinstock, G., Wollam, A., Detter, J. C.
Published in Science (American Association for the Advancement of Science) (09.10.2009)
Published in Science (American Association for the Advancement of Science) (09.10.2009)
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Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation
Angiuoli, Samuel V, Gussman, Aaron, Klimke, William, Cochrane, Guy, Field, Dawn, Garrity, George, Kodira, Chinnappa D, Kyrpides, Nikos, Madupu, Ramana, Markowitz, Victor, Tatusova, Tatiana, Thomson, Nick, White, Owen
Published in Omics (Larchmont, N.Y.) (01.06.2008)
Published in Omics (Larchmont, N.Y.) (01.06.2008)
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Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence
Manning, Viola A, Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J, Goodwin, Stephen B, Berlin, Aaron M, Figueroa, Melania, Freitag, Michael, Hane, James K, Henrissat, Bernard, Holman, Wade H, Kodira, Chinnappa D, Martin, Joel, Oliver, Richard P, Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C, Spatafora, Joseph W, Turgeon, B Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V, Ma, Li-Jun, Ciuffetti, Lynda M
Published in G3 : genes - genomes - genetics (01.01.2013)
Published in G3 : genes - genomes - genetics (01.01.2013)
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi
Duplessis, Sébastien, Cuomo, Christina A, Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L, Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L, Chiu, Readman, Coutinho, Pedro M, Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G, Kodira, Chinnappa D, Kohler, Annegret, Kües, Ursula, Lindquist, Erika A, Lucas, Susan M, Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L, Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A, Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A, Henrissat, Bernard, Peer, Yves Van de, Rouzé, Pierre, Ellis, Jeffrey G, Dodds, Peter N, Schein, Jacqueline E, Zhong, Shaobin, Hamelin, Richard C, Grigoriev, Igor V, Szabo, Les J, Martin, Francis
Published in Proceedings of the National Academy of Sciences - PNAS (31.05.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (31.05.2011)
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The Sequence of the Human Genome
Li, Peter W., Yandell, Mark, Evans, Cheryl A., Gocayne, Jeannine D., Huson, Daniel H., Zhang, Qing, Zheng, Xiangqun H., Chen, Lin, Skupski, Marian, Nelson, Catherine, Broder, Samuel, Clark, Andrew G., Nadeau, Joe, McKusick, Victor A., Simon, Mel, Slayman, Carolyn, Halpern, Aaron, Levy, Samuel, Remington, Karin, Biddick, Kendra, Bonazzi, Vivien, Brandon, Rhonda, Charlab, Rosane, Chaturvedi, Kabir, Di Francesco, Valentina, Dunn, Patrick, Evangelista, Carlos, Gu, Zhiping, Guan, Ping, Ke, Zhaoxi, Ketchum, Karen A., Lei, Yiding, Li, Zhenya, Li, Jiayin, Liang, Yong, Lin, Xiaoying, Milshina, Natalia, Moore, Helen M., Rusch, Douglas B., Shao, Wei, Wang, Zhen Yuan, Wei, Ming-Hui, Xiao, Chunlin, Zhang, Hongyu, Zhao, Qi, Zhong, Wenyan, Spier, Gene, Ali, Feroze, Angela Center, Dodson, Kristina, Gluecksmann, Andres, Hart, Brit, Haynes, Jason, Howland, Timothy, Koduru, Shashi, May, David, McCawley, Steven, Mclntosh, Tina, McMullen, Ivy, Moy, Mee, Nelson, Keith, Pfannkoch, Cynthia, Ruhfel, Bob, Scott, Richard, Sitter, Cynthia, Wetter, Jeremy, Williams, Sherita, Windsor, Sandra, Zaveri, Karena, Campbell, Michael J., Mi, Huaiyu, Lazareva, Betty, Hatton, Thomas, Walenz, Brian, Yooseph, Shibu, Allen, David, Caminha, Marcelo, Caulk, Parris, Dombroski, Maria, Donnelly, Michael, Fosler, Carl, Gire, Harold, Glanowski, Stephen, Glasser, Kenneth, Gorokhov, Mark, Gropman, Barry, Heil, Jeremy, Henderson, Scott, Majoros, William, McDaniel, Joe, Newman, Matthew, Nguyen, Ngoc, Pan, Sue, Peck, Jim, Peterson, Marshall, Wang, Mei, Wu, David, Wu, Mitchell, Xia, Ashley, Zandieh, Ali
Published in Science (American Association for the Advancement of Science) (16.02.2001)
Published in Science (American Association for the Advancement of Science) (16.02.2001)
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The complete genome and proteome of Mycoplasma mobile
Jaffe, Jacob D, Stange-Thomann, Nicole, Smith, Cherylyn, DeCaprio, David, Fisher, Sheila, Butler, Jonathan, Calvo, Sarah, Elkins, Tim, FitzGerald, Michael G, Hafez, Nabil, Kodira, Chinnappa D, Major, John, Wang, Shunguang, Wilkinson, Jane, Nicol, Robert, Nusbaum, Chad, Birren, Bruce, Berg, Howard C, Church, George M
Published in Genome research (01.08.2004)
Published in Genome research (01.08.2004)
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Verticillium comparative genomics: Understanding pathogenicity and diversity
Klosterman, S J, Veronese, P, Dobinson, K F, Subbarao, K, Heiman, DI, Young, S, Kodira, C D, Alvarado, L, Galagan, J, Birren, B, Cuomo, C, Anchieta, A, Kang, S, Gold, SE, Ma, L-J
Published in Phytopathology (01.06.2008)
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Published in Phytopathology (01.06.2008)
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A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome
Mural, Richard J., Adams, Mark D., Smith, Hamilton O., George L. Gabor Miklos, Halpern, Aaron, Li, Peter W., Salzberg, Steven L., Holt, Robert A., Lu, Fu, Gan, Weiniu, Heiman, Thomas J., Milshina, Natalia V., Wang, Aihui, Wang, Jian, Ye, Jane, Yooseph, Shibu, Zhao, Qi, Zheng, Liansheng, Biddick, Kendra, Bolanos, Randall, Delcher, Arthur L., Dew, Ian M., Fasulo, Daniel, Huson, Daniel H., Miller, Jason R., Mobarry, Clark M., Reinert, Knut, Zhang, Qing, Nusskern, Deborah R., Lei, Yiding, Guan, Ping, Ji, Rui-Ru, Wang, Zhen-Yuan, Zhong, Fei, Chiang, Chia-Chien, Yandell, Mark, Wortman, Jennifer R., Amanatides, Peter G., Pratts, Eric C., Johnson, Jeffery E., Dodson, Kristina L., Gropman, Barry, Rusch, Douglas B., Venter, Eli, Wang, Mei, Houck, Jarrett T., Tompkins, Donald E., Haynes, Charles, Chin, Soo H., Allen, David R., Li, Kelvin, Liu, Xiangjun, Levitsky, Alexander A., Majoros, William H., Xia, Ashley C., Newman, Matthew H., Ali, Feroze, Baldwin-Pitts, Danita, Caulk, Parris M., Angela Center, Chen, Yen-Hui, Cheng, Ming-Lai, Coyne, My D., Crowder, Michelle, Danaher, Steven, Davenport, Lionel B., Ferriera, Steven, Fosler, Carl R., Gire, Harold C., Gluecksmann, Andres, Hart, Brit, Haynes, Jason, Johns, David, Kline, Leslie, Ma, Daniel S., MacCawley, Steven, Magoon, Anand, Mann, Felecia, May, David, McIntosh, Tina C., Puri, Vinita N., Qureshi, Hina, Raley, John C., Reardon, Matthew S., Regier, Megan A., Rogers, Yu-Hui C., Romblad, Deanna L., Scott, Richard, Sitter, Cynthia D., Smallwood, Michella, Sprague, Arlan C., Strong, Renee V., Sylvester, Karena, Tint, Tsonis, Christopher, Wang, Gary, Wang, George, Windsor, Sandra M., Wolfe, Keriellen, Chaturvedi, Kabir
Published in Science (American Association for the Advancement of Science) (31.05.2002)
Published in Science (American Association for the Advancement of Science) (31.05.2002)
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Journal Article
DNA sequence and analysis of human chromosome 8
Nusbaum, Chad, Shimizu, Nobuyoshi, Mikkelsen, Tarjei S, Zody, Michael C, Asakawa, Shuichi, Taudien, Stefan, Garber, Manuel, Kodira, Chinnappa D, Schueler, Mary G, Shimizu, Atsushi, Whittaker, Charles A, Chang, Jean L, Cuomo, Christina A, Dewar, Ken, FitzGerald, Michael G, Yang, Xiaoping, Allen, Nicole R, Anderson, Scott, Asakawa, Teruyo, Blechschmidt, Karin, Bloom, Toby, Borowsky, Mark L, Butler, Jonathan, Cook, April, Corum, Benjamin, DeArellano, Kurt, DeCaprio, David, Dooley, Kathleen T, Dorris, Lester, Engels, Reinhard, Glöckner, Gernot, Hafez, Nabil, Hagopian, Daniel S, Hall, Jennifer L, Ishikawa, Sabine K, Jaffe, David B, Kamat, Asha, Kudoh, Jun, Lehmann, Rüdiger, Lokitsang, Tashi, Macdonald, Pendexter, Major, John E, Matthews, Charles D, Mauceli, Evan, Menzel, Uwe, Mihalev, Atanas H, Minoshima, Shinsei, Murayama, Yuji, Naylor, Jerome W, Nicol, Robert, Nguyen, Cindy, O'Leary, Sinéad B, O'Neill, Keith, Parker, Stephen C. J, Polley, Andreas, Raymond, Christina K, Reichwald, Kathrin, Rodriguez, Joseph, Sasaki, Takashi, Schilhabel, Markus, Siddiqui, Roman, Smith, Cherylyn L, Sneddon, Tam P, Talamas, Jessica A, Tenzin, Pema, Topham, Kerri, Venkataraman, Vijay, Wen, Gaiping, Yamazaki, Satoru, Young, Sarah K, Zeng, Qiandong, Zimmer, Andrew R, Rosenthal, Andre, Birren, Bruce W, Platzer, Matthias, Lander, Eric S
Published in Nature (19.01.2006)
Published in Nature (19.01.2006)
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Journal Article
Analysis of the DNA sequence and duplication history of human chromosome 15
Zody, Michael C, Nusbaum, Chad, Garber, Manuel, Sharpe, Ted, Young, Sarah K, Rowen, Lee, O'Neill, Keith, Whittaker, Charles A, Kamal, Michael, Chang, Jean L, Cuomo, Christina A, Dewar, Ken, FitzGerald, Michael G, Kodira, Chinnappa D, Madan, Anup, Qin, Shizhen, Yang, Xiaoping, Abbasi, Nissa, Abouelleil, Amr, Arachchi, Harindra M, Baradarani, Lida, Birditt, Brian, Bloom, Scott, Bloom, Toby, Borowsky, Mark L, Burke, Jeremy, Butler, Jonathan, Cook, April, DeArellano, Kurt, DeCaprio, David, Dorris, Lester, Dors, Monica, Eichler, Evan E, Engels, Reinhard, Fahey, Jessica, Fleetwood, Peter, Friedman, Cynthia, Gearin, Gary, Hall, Jennifer L, Hensley, Grace, Johnson, Ericka, Jones, Charlien, Kamat, Asha, Kaur, Amardeep, Locke, Devin P, Madan, Anuradha, Munson, Glen, Jaffe, David B, Lui, Annie, Macdonald, Pendexter, Mauceli, Evan, Naylor, Jerome W, Nesbitt, Ryan, Nicol, Robert, O'Leary, Sinéad B, Ratcliffe, Amber, Rounsley, Steven, She, Xinwei, Sneddon, Katherine M. B, Stewart, Sandra, Sougnez, Carrie, Stone, Sabrina M, Topham, Kerri, Vincent, Dascena, Wang, Shunguang, Zimmer, Andrew R, Birren, Bruce W, Hood, Leroy, Lander, Eric S
Published in Nature (30.03.2006)
Published in Nature (30.03.2006)
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Journal Article
Genomics. Genome project standards in a new era of sequencing
Chain, P S G, Grafham, D V, Fulton, R S, Fitzgerald, M G, Hostetler, J, Muzny, D, Ali, J, Birren, B, Bruce, D C, Buhay, C, Cole, J R, Ding, Y, Dugan, S, Field, D, Garrity, G M, Gibbs, R, Graves, T, Han, C S, Harrison, S H, Highlander, S, Hugenholtz, P, Khouri, H M, Kodira, C D, Kolker, E, Kyrpides, N C, Lang, D, Lapidus, A, Malfatti, S A, Markowitz, V, Metha, T, Nelson, K E, Parkhill, J, Pitluck, S, Qin, X, Read, T D, Schmutz, J, Sozhamannan, S, Sterk, P, Strausberg, R L, Sutton, G, Thomson, N R, Tiedje, J M, Weinstock, G, Wollam, A, Detter, J C
Published in Science (American Association for the Advancement of Science) (09.10.2009)
Published in Science (American Association for the Advancement of Science) (09.10.2009)
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Journal Article
DNA sequence and analysis of human chromosome 18
Engels, Reinhard, Toyoda, Atsushi, Nicol, Robert, Kamal, Michael, Mauceli, Evan, Jaffe, David B, Lehoczky, Jessica, Macdonald, Pendexter, Itoh, Takehiko, Piqani, Bruno, Dewar, Ken, Nusbaum, Chad, Anderson, Scott, Norman, Catherine Hosage, Hafez, Nabil, Totoki, Yasushi, Zeng, Qiandong, Talamas, Jessica A, Lui, Annie, Gnirke, Andreas, Borowsky, Mark L, Lander, Eric S, DeCaprio, David, Naylor, Jerome W, Kuroki, Yoko, Allen, Nicole R, Topham, Kerri, FitzGerald, Michael G, Chang, Jean L, Birren, Bruce W, Cuomo, Christina A, Bugalter, Boris, Noguchi, Hideki, Cook, April, Fujiyama, Asao, Kodira, Chinnappa D, Zimmer, Andrew R, Yang, Xiaoping, O'Leary, Sinéad B, Zody, Michael C, Young, Sarah K, Hattori, Masahira, Wain, Hester M, Abouelleil, Amr, Taylor, Todd D, Hall, Jennifer L, L Smith, Cherylyn, Bloom, Toby, Sakaki, Yoshiyuki, Mikkelsen, Tarjei S, Butler, Jonathan, Nguyen, Cindy, Garber, Manuel, Whittaker, Charles A
Published in Nature (22.09.2005)
Published in Nature (22.09.2005)
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DNA sequence and analysis of human chromosome 18
Published in Nature (London)
(01.12.2005)
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