On the influence of several factors on pathway enrichment analysis
Mubeen, Sarah, Tom Kodamullil, Alpha, Hofmann-Apitius, Martin, Domingo-Fernández, Daniel
Published in Briefings in bioinformatics (13.05.2022)
Published in Briefings in bioinformatics (13.05.2022)
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Journal Article
Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders
Hofmann-Apitius, Martin, Ball, Gordon, Gebel, Stephan, Bagewadi, Shweta, de Bono, Bernard, Schneider, Reinhard, Page, Matt, Kodamullil, Alpha Tom, Younesi, Erfan, Ebeling, Christian, Tegnér, Jesper, Canard, Luc
Published in International journal of molecular sciences (07.12.2015)
Published in International journal of molecular sciences (07.12.2015)
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Journal Article
Design of the formalized and integrated Alzheimer’s Disease Ontology and its application in retrieving textual data via text mining
Zhang, Bide, Lage-Rupprecht, Vanessa, Wegner, Philipp, Sargsyan, Astghik, Gebel, Stephan, Jacobs, Marc, Klein, Jürgen, Hofmann-Apitius, Martin, Tom Kodamullil, Alpha
Published in Database : the journal of biological databases and curation (02.12.2023)
Published in Database : the journal of biological databases and curation (02.12.2023)
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Journal Article
Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational-Experimental Approach
Hopp, Marie-Thérèse, Domingo-Fernández, Daniel, Gadiya, Yojana, Detzel, Milena S, Graf, Regina, Schmalohr, Benjamin F, Kodamullil, Alpha T, Imhof, Diana, Hofmann-Apitius, Martin
Published in Biomolecules (Basel, Switzerland) (27.04.2021)
Published in Biomolecules (Basel, Switzerland) (27.04.2021)
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Journal Article
Identifying multimodal signatures underlying the somatic comorbidity of psychosis: the COMMITMENT roadmap
Schwarz, Emanuel, Alnæs, Dag, Andreassen, Ole A., Cao, Han, Chen, Junfang, Degenhardt, Franziska, Doncevic, Daria, Dwyer, Dominic, Eils, Roland, Erdmann, Jeanette, Herrmann, Carl, Hofmann-Apitius, Martin, Kaufmann, Tobias, Koutsouleris, Nikolaos, Kodamullil, Alpha T., Khuntia, Adyasha, Mucha, Sören, Nöthen, Markus M., Paul, Riya, Pedersen, Mads L., Quintero, Andres, Schunkert, Heribert, Sharma, Ashwini, Tost, Heike, Westlye, Lars T., Zhang, Youcheng, Meyer-Lindenberg, Andreas
Published in Molecular psychiatry (01.03.2021)
Published in Molecular psychiatry (01.03.2021)
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Journal Article
Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System
Mubeen, Sarah, Domingo-Fernández, Daniel, Díaz del Ser, Sara, Solanki, Dhwani M., Kodamullil, Alpha T., Hofmann-Apitius, Martin, Hopp, Marie-T., Imhof, Diana
Published in Journal of clinical medicine (10.10.2022)
Published in Journal of clinical medicine (10.10.2022)
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Journal Article
Contribution of syndecans to cellular uptake and fibrillation of α-synuclein and tau
Hudák, Anett, Kusz, Erzsébet, Domonkos, Ildikó, Jósvay, Katalin, Kodamullil, Alpha Tom, Szilák, László, Hofmann-Apitius, Martin, Letoha, Tamás
Published in Scientific reports (12.11.2019)
Published in Scientific reports (12.11.2019)
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Journal Article
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)
Fluck, Juliane, Madan, Sumit, Ansari, Sam, Kodamullil, Alpha T, Karki, Reagon, Rastegar-Mojarad, Majid, Catlett, Natalie L, Hayes, William, Szostak, Justyna, Hoeng, Julia, Peitsch, Manuel
Published in Database : the journal of biological databases and curation (2016)
Published in Database : the journal of biological databases and curation (2016)
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Journal Article
Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer’s Disease
Karki, Reagon, Madan, Sumit, Gadiya, Yojana, Domingo-Fernández, Daniel, Kodamullil, Alpha Tom, Hofmann-Apitius, Martin
Published in Journal of Alzheimer's disease (01.01.2020)
Published in Journal of Alzheimer's disease (01.01.2020)
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Journal Article
Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis
Hofmann-Apitius, Martin, Gündel, Michaela, Tom Kodamullil, Alpha, Khanam Irin, Afroza
Published in Journal of Immunology Research (01.01.2015)
Published in Journal of Immunology Research (01.01.2015)
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Journal Article
Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models
Kodamullil, Alpha Tom, Iyappan, Anandhi, Karki, Reagon, Madan, Sumit, Younesi, Erfan, Hofmann-Apitius, Martin
Published in Journal of Alzheimer's disease (01.01.2017)
Published in Journal of Alzheimer's disease (01.01.2017)
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Journal Article
Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets
Figueiredo, Rebeca Queiroz, Del Ser, Sara Díaz, Raschka, Tamara, Hofmann-Apitius, Martin, Kodamullil, Alpha Tom, Mubeen, Sarah, Domingo-Fernández, Daniel
Published in BMC bioinformatics (15.06.2022)
Published in BMC bioinformatics (15.06.2022)
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Journal Article
A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer’s Disease
Golriz Khatami, Sepehr, Domingo-Fernández, Daniel, Mubeen, Sarah, Hoyt, Charles Tapley, Robinson, Christine, Karki, Reagon, Iyappan, Anandhi, Kodamullil, Alpha Tom, Hofmann-Apitius, Martin
Published in Journal of Alzheimer's disease (01.01.2021)
Published in Journal of Alzheimer's disease (01.01.2021)
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Journal Article
Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases
Emon, Mohammad Asif Emran Khan, Kodamullil, Alpha Tom, Karki, Reagon, Younesi, Erfan, Hofmann-Apitius, Martin
Published in Journal of Alzheimer's disease (01.01.2017)
Published in Journal of Alzheimer's disease (01.01.2017)
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Journal Article