ProHits-viz: a suite of web tools for visualizing interaction proteomics data
Knight, James D R, Choi, Hyungwon, Gupta, Gagan D, Pelletier, Laurence, Raught, Brian, Nesvizhskii, Alexey I, Gingras, Anne-Claude
Published in Nature methods (01.07.2017)
Published in Nature methods (01.07.2017)
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Journal Article
A web-tool for visualizing quantitative protein-protein interaction data
Knight, James D. R., Liu, Guomin, Zhang, Jian Ping, Pasculescu, Adrian, Choi, Hyungwon, Gingras, Anne-Claude
Published in Proteomics (Weinheim) (01.04.2015)
Published in Proteomics (Weinheim) (01.04.2015)
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Journal Article
The GATOR–Rag GTPase pathway inhibits mTORC1 activation by lysosome-derived amino acids
Hesketh, Geoffrey G., Papazotos, Fotini, Pawling, Judy, Rajendran, Dushyandi, Knight, James D. R., Martinez, Sebastien, Taipale, Mikko, Schramek, Daniel, Dennis, James W., Gingras, Anne-Claude
Published in Science (American Association for the Advancement of Science) (16.10.2020)
Published in Science (American Association for the Advancement of Science) (16.10.2020)
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Journal Article
Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions
Couzens, Amber L, Knight, James D R, Kean, Michelle J, Teo, Guoci, Weiss, Alexander, Dunham, Wade H, Lin, Zhen-Yuan, Bagshaw, Richard D, Sicheri, Frank, Pawson, Tony, Wrana, Jeffrey L, Choi, Hyungwon, Gingras, Anne-Claude
Published in Science signaling (19.11.2013)
Published in Science signaling (19.11.2013)
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Journal Article
MOB1 Mediated Phospho-recognition in the Core Mammalian Hippo Pathway
Couzens, Amber L., Xiong, Shawn, Knight, James D.R., Mao, Daniel Y., Guettler, Sebastian, Picaud, Sarah, Kurinov, Igor, Filippakopoulos, Panagis, Sicheri, Frank, Gingras, Anne-Claude
Published in Molecular & cellular proteomics (01.06.2017)
Published in Molecular & cellular proteomics (01.06.2017)
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Journal Article
SAINTq: Scoring protein-protein interactions in affinity purification - mass spectrometry experiments with fragment or peptide intensity data
Teo, Guoci, Koh, Hiromi, Fermin, Damian, Lambert, Jean-Philippe, Knight, James D.R., Gingras, Anne-Claude, Choi, Hyungwon
Published in Proteomics (Weinheim) (01.08.2016)
Published in Proteomics (Weinheim) (01.08.2016)
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Journal Article
Properties of Stress Granule and P-Body Proteomes
Youn, Ji-Young, Dyakov, Boris J.A., Zhang, Jianping, Knight, James D.R., Vernon, Robert M., Forman-Kay, Julie D., Gingras, Anne-Claude
Published in Molecular cell (17.10.2019)
Published in Molecular cell (17.10.2019)
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Journal Article
A proximity-dependent biotinylation map of a human cell
Go, Christopher D, Knight, James D R, Rajasekharan, Archita, Rathod, Bhavisha, Hesketh, Geoffrey G, Abe, Kento T, Youn, Ji-Young, Samavarchi-Tehrani, Payman, Zhang, Hui, Zhu, Lucie Y, Popiel, Evelyn, Lambert, Jean-Philippe, Coyaud, Étienne, Cheung, Sally W T, Rajendran, Dushyandi, Wong, Cassandra J, Antonicka, Hana, Pelletier, Laurence, Palazzo, Alexander F, Shoubridge, Eric A, Raught, Brian, Gingras, Anne-Claude
Published in Nature (London) (01.07.2021)
Published in Nature (London) (01.07.2021)
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Journal Article
High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies
Youn, Ji-Young, Dunham, Wade H., Hong, Seo Jung, Knight, James D.R., Bashkurov, Mikhail, Chen, Ginny I., Bagci, Halil, Rathod, Bhavisha, MacLeod, Graham, Eng, Simon W.M., Angers, Stéphane, Morris, Quaid, Fabian, Marc, Côté, Jean-François, Gingras, Anne-Claude
Published in Molecular cell (01.02.2018)
Published in Molecular cell (01.02.2018)
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Journal Article
Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes
Lambert, Jean-Philippe, Tucholska, Monika, Go, Christopher, Knight, James D.R., Gingras, Anne-Claude
Published in Journal of proteomics (06.04.2015)
Published in Journal of proteomics (06.04.2015)
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Journal Article
MSPLIT-DIA: sensitive peptide identification for data-independent acquisition
Wang, Jian, Tucholska, Monika, Knight, James D R, Lambert, Jean-Philippe, Tate, Stephen, Larsen, Brett, Gingras, Anne-Claude, Bandeira, Nuno
Published in Nature methods (01.12.2015)
Published in Nature methods (01.12.2015)
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Journal Article
Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
Lambert, Jean-Philippe, Picaud, Sarah, Fujisawa, Takao, Hou, Huayun, Savitsky, Pavel, Uusküla-Reimand, Liis, Gupta, Gagan D., Abdouni, Hala, Lin, Zhen-Yuan, Tucholska, Monika, Knight, James D.R., Gonzalez-Badillo, Beatriz, St-Denis, Nicole, Newman, Joseph A., Stucki, Manuel, Pelletier, Laurence, Bandeira, Nuno, Wilson, Michael D., Filippakopoulos, Panagis, Gingras, Anne-Claude
Published in Molecular cell (07.02.2019)
Published in Molecular cell (07.02.2019)
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Journal Article
Biochemical, proteomic, structural, and thermodynamic characterizations of integrin-linked kinase (ILK): cross-validation of the pseudokinase
Fukuda, Koichi, Knight, James D R, Piszczek, Grzegorz, Kothary, Rashmi, Qin, Jun
Published in The Journal of biological chemistry (17.06.2011)
Published in The Journal of biological chemistry (17.06.2011)
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Journal Article
Gene Information eXtension (GIX): effortless retrieval of gene product information on any website
Knight, James D R, Samavarchi-Tehrani, Payman, Tyers, Mike, Gingras, Anne-Claude
Published in Nature methods (01.08.2019)
Published in Nature methods (01.08.2019)
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Journal Article
CCM-3/STRIPAK promotes seamless tube extension through endocytic recycling
Lant, Benjamin, Yu, Bin, Goudreault, Marilyn, Holmyard, Doug, Knight, James D R, Xu, Peter, Zhao, Linda, Chin, Kelly, Wallace, Evan, Zhen, Mei, Gingras, Anne-Claude, Derry, W Brent
Published in Nature communications (06.03.2015)
Published in Nature communications (06.03.2015)
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Journal Article
Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators
St-Denis, Nicole, Gupta, Gagan D., Lin, Zhen Yuan, Gonzalez-Badillo, Beatriz, Veri, Amanda O., Knight, James D.R., Rajendran, Dushyandi, Couzens, Amber L., Currie, Ko W., Tkach, Johnny M., Cheung, Sally W.T., Pelletier, Laurence, Gingras, Anne-Claude
Published in Cell reports (Cambridge) (22.11.2016)
Published in Cell reports (Cambridge) (22.11.2016)
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Journal Article
Data Independent Acquisition analysis in ProHits 4.0
Liu, Guomin, Knight, James D.R., Zhang, Jian Ping, Tsou, Chih-Chiang, Wang, Jian, Lambert, Jean-Philippe, Larsen, Brett, Tyers, Mike, Raught, Brian, Bandeira, Nuno, Nesvizhskii, Alexey I., Choi, Hyungwon, Gingras, Anne-Claude
Published in Journal of proteomics (21.10.2016)
Published in Journal of proteomics (21.10.2016)
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Journal Article
A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts
Knight, James Dr, Tian, Ruijun, Lee, Robin Ec, Wang, Fangjun, Beauvais, Ariane, Zou, Hanfa, Megeney, Lynn A, Gingras, Anne-Claude, Pawson, Tony, Figeys, Daniel, Kothary, Rashmi
Published in Skeletal muscle (06.03.2012)
Published in Skeletal muscle (06.03.2012)
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