High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies
Youn, Ji-Young, Dunham, Wade H., Hong, Seo Jung, Knight, James D.R., Bashkurov, Mikhail, Chen, Ginny I., Bagci, Halil, Rathod, Bhavisha, MacLeod, Graham, Eng, Simon W.M., Angers, Stéphane, Morris, Quaid, Fabian, Marc, Côté, Jean-François, Gingras, Anne-Claude
Published in Molecular cell (01.02.2018)
Published in Molecular cell (01.02.2018)
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Journal Article
Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes
Lambert, Jean-Philippe, Tucholska, Monika, Go, Christopher, Knight, James D.R., Gingras, Anne-Claude
Published in Journal of proteomics (06.04.2015)
Published in Journal of proteomics (06.04.2015)
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Journal Article
Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
Lambert, Jean-Philippe, Picaud, Sarah, Fujisawa, Takao, Hou, Huayun, Savitsky, Pavel, Uusküla-Reimand, Liis, Gupta, Gagan D., Abdouni, Hala, Lin, Zhen-Yuan, Tucholska, Monika, Knight, James D.R., Gonzalez-Badillo, Beatriz, St-Denis, Nicole, Newman, Joseph A., Stucki, Manuel, Pelletier, Laurence, Bandeira, Nuno, Wilson, Michael D., Filippakopoulos, Panagis, Gingras, Anne-Claude
Published in Molecular cell (07.02.2019)
Published in Molecular cell (07.02.2019)
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Journal Article
MSPLIT-DIA: sensitive peptide identification for data-independent acquisition
Wang, Jian, Tucholska, Monika, Knight, James D R, Lambert, Jean-Philippe, Tate, Stephen, Larsen, Brett, Gingras, Anne-Claude, Bandeira, Nuno
Published in Nature methods (01.12.2015)
Published in Nature methods (01.12.2015)
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Journal Article
An Unbiased Proteomic Screen Reveals Caspase Cleavage Is Positively and Negatively Regulated by Substrate Phosphorylation
Turowec, Jacob P., Zukowski, Stephanie A., Knight, James D.R., Smalley, David M., Graves, Lee M., Johnson, Gary L., Li, Shawn S.C., Lajoie, Gilles A., Litchfield, David W.
Published in Molecular & cellular proteomics (01.05.2014)
Published in Molecular & cellular proteomics (01.05.2014)
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Journal Article
Gene Information eXtension (GIX): effortless retrieval of gene product information on any website
Knight, James D. R., Samavarchi-Tehrani, Payman, Tyers, Mike, Gingras, Anne-Claude
Published in Nature methods (01.08.2019)
Published in Nature methods (01.08.2019)
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Journal Article
Data Independent Acquisition analysis in ProHits 4.0
Liu, Guomin, Knight, James D.R., Zhang, Jian Ping, Tsou, Chih-Chiang, Wang, Jian, Lambert, Jean-Philippe, Larsen, Brett, Tyers, Mike, Raught, Brian, Bandeira, Nuno, Nesvizhskii, Alexey I., Choi, Hyungwon, Gingras, Anne-Claude
Published in Journal of proteomics (21.10.2016)
Published in Journal of proteomics (21.10.2016)
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Journal Article
Profiling the kinome: Current capabilities and future challenges
Knight, James D.R., Pawson, Tony, Gingras, Anne-Claude
Published in Journal of proteomics (09.04.2013)
Published in Journal of proteomics (09.04.2013)
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Journal Article
Contamination of Australian newborn calf carcasses at slaughter with Clostridium difficile
Knight, D.R., Putsathit, P., Elliott, B., Riley, T.V.
Published in Clinical microbiology and infection (01.03.2016)
Published in Clinical microbiology and infection (01.03.2016)
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Journal Article
Natural products show diverse mechanisms of action against Clostridium difficile
Roshan, N., Riley, T.V., Knight, D.R., Steer, J.H., Hammer, K.A.
Published in Journal of applied microbiology (01.02.2019)
Published in Journal of applied microbiology (01.02.2019)
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Journal Article
In silico, in vitro and in vivo analysis of putative virulence factors identified in large clostridial toxin-negative, binary toxin- producing C. difficile strains
Androga, G.O., Knight, D.R., Hutton, M.L., Mileto, S.J., James, M.L., Evans, C., Lyras, D., Chang, B.J., Foster, N.F., Riley, T.V.
Published in Anaerobe (01.12.2019)
Published in Anaerobe (01.12.2019)
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Journal Article
Properties of Stress Granule and P-Body Proteomes
Youn, Ji-Young, Dyakov, Boris J.A., Zhang, Jianping, Knight, James D.R., Vernon, Robert M., Forman-Kay, Julie D., Gingras, Anne-Claude
Published in Molecular cell (17.10.2019)
Published in Molecular cell (17.10.2019)
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Journal Article
A proximity-dependent biotinylation map of a human cell
Go, Christopher D., Knight, James D. R., Rajasekharan, Archita, Rathod, Bhavisha, Hesketh, Geoffrey G., Abe, Kento T., Youn, Ji-Young, Samavarchi-Tehrani, Payman, Zhang, Hui, Zhu, Lucie Y., Popiel, Evelyn, Lambert, Jean-Philippe, Coyaud, Étienne, Cheung, Sally W. T., Rajendran, Dushyandi, Wong, Cassandra J., Antonicka, Hana, Pelletier, Laurence, Palazzo, Alexander F., Shoubridge, Eric A., Raught, Brian, Gingras, Anne-Claude
Published in Nature (London) (01.07.2021)
Published in Nature (London) (01.07.2021)
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Journal Article
ProHits-viz: a suite of web tools for visualizing interaction proteomics data
Knight, James D R, Choi, Hyungwon, Gupta, Gagan D, Pelletier, Laurence, Raught, Brian, Nesvizhskii, Alexey I, Gingras, Anne-Claude
Published in Nature methods (01.07.2017)
Published in Nature methods (01.07.2017)
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Journal Article
The GATOR–Rag GTPase pathway inhibits mTORC1 activation by lysosome-derived amino acids
Hesketh, Geoffrey G., Papazotos, Fotini, Pawling, Judy, Rajendran, Dushyandi, Knight, James D. R., Martinez, Sebastien, Taipale, Mikko, Schramek, Daniel, Dennis, James W., Gingras, Anne-Claude
Published in Science (American Association for the Advancement of Science) (16.10.2020)
Published in Science (American Association for the Advancement of Science) (16.10.2020)
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Journal Article
Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions
Couzens, Amber L, Knight, James D R, Kean, Michelle J, Teo, Guoci, Weiss, Alexander, Dunham, Wade H, Lin, Zhen-Yuan, Bagshaw, Richard D, Sicheri, Frank, Pawson, Tony, Wrana, Jeffrey L, Choi, Hyungwon, Gingras, Anne-Claude
Published in Science signaling (19.11.2013)
Published in Science signaling (19.11.2013)
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Journal Article
A SARS-CoV-2 – host proximity interactome
Samavarchi-Tehrani, Payman, Abdouni, Hala, Knight, James Dr, Astori, Audrey, Samson, Reuben, Zhen-Yuan, Lin, Kim, Dae-Kyum, Knapp, Jennifer J, St-Germain, Jonathan, Go, Christopher D, Larsen, Brett, Wong, Cassandra J, Cassonnet, Patricia, Demeret, Caroline, Jacob, Yves, Roth, Frederick P, Raught, Brian, Gingras, Anne-Claude
Published in bioRxiv (04.09.2020)
Published in bioRxiv (04.09.2020)
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Paper
Biochemical, proteomic, structural, and thermodynamic characterizations of integrin-linked kinase (ILK): cross-validation of the pseudokinase
Fukuda, Koichi, Knight, James D R, Piszczek, Grzegorz, Kothary, Rashmi, Qin, Jun
Published in The Journal of biological chemistry (17.06.2011)
Published in The Journal of biological chemistry (17.06.2011)
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Journal Article
MOB1 Mediated Phospho-recognition in the Core Mammalian Hippo Pathway
Couzens, Amber L., Xiong, Shawn, Knight, James D.R., Mao, Daniel Y., Guettler, Sebastian, Picaud, Sarah, Kurinov, Igor, Filippakopoulos, Panagis, Sicheri, Frank, Gingras, Anne-Claude
Published in Molecular & cellular proteomics (01.06.2017)
Published in Molecular & cellular proteomics (01.06.2017)
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Journal Article