Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming
Liu, Xiaodong, Nefzger, Christian M, Rossello, Fernando J, Chen, Joseph, Knaupp, Anja S, Firas, Jaber, Ford, Ethan, Pflueger, Jahnvi, Paynter, Jacob M, Chy, Hun S, O'Brien, Carmel M, Huang, Cheng, Mishra, Ketan, Hodgson-Garms, Margeaux, Jansz, Natasha, Williams, Sarah M, Blewitt, Marnie E, Nilsson, Susan K, Schittenhelm, Ralf B, Laslett, Andrew L, Lister, Ryan, Polo, Jose M
Published in Nature methods (01.11.2017)
Published in Nature methods (01.11.2017)
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A predictive computational framework for direct reprogramming between human cell types
Rackham, Owen J L, Firas, Jaber, Fang, Hai, Oates, Matt E, Holmes, Melissa L, Knaupp, Anja S, Suzuki, Harukazu, Nefzger, Christian M, Daub, Carsten O, Shin, Jay W, Petretto, Enrico, Forrest, Alistair R R, Hayashizaki, Yoshihide, Polo, Jose M, Gough, Julian
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming
Knaupp, Anja S., Buckberry, Sam, Pflueger, Jahnvi, Lim, Sue Mei, Ford, Ethan, Larcombe, Michael R., Rossello, Fernando J., de Mendoza, Alex, Alaei, Sara, Firas, Jaber, Holmes, Melissa L., Nair, Shalima S., Clark, Susan J., Nefzger, Christian M., Lister, Ryan, Polo, Jose M.
Published in Cell stem cell (07.12.2017)
Published in Cell stem cell (07.12.2017)
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Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells
Gerdes, Patricia, Lim, Sue Mei, Ewing, Adam D, Larcombe, Michael R, Chan, Dorothy, Sanchez-Luque, Francisco J, Walker, Lucinda, Carleton, Alexander L, James, Cini, Knaupp, Anja S, Carreira, Patricia E, Nefzger, Christian M, Lister, Ryan, Richardson, Sandra R, Polo, Jose M, Faulkner, Geoffrey J
Published in Nature communications (03.12.2022)
Published in Nature communications (03.12.2022)
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SRSF3 promotes pluripotency through Nanog mRNA export and coordination of the pluripotency gene expression program
Ratnadiwakara, Madara, Archer, Stuart K, Dent, Craig I, Ruiz De Los Mozos, Igor, Beilharz, Traude H, Knaupp, Anja S, Nefzger, Christian M, Polo, Jose M, Anko, Minna-Liisa
Published in eLife (09.05.2018)
Published in eLife (09.05.2018)
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3D-cardiomics: A spatial transcriptional atlas of the mammalian heart
Mohenska, Monika, Tan, Nathalia M., Tokolyi, Alex, Furtado, Milena B., Costa, Mauro W., Perry, Andrew J., Hatwell-Humble, Jessica, van Duijvenboden, Karel, Nim, Hieu T., Ji, Yuan M.M., Charitakis, Natalie, Bienroth, Denis, Bolk, Francesca, Vivien, Celine, Knaupp, Anja S., Powell, David R., Elliott, David A., Porrello, Enzo R., Nilsson, Susan K., del Monte-Nieto, Gonzalo, Rosenthal, Nadia A., Rossello, Fernando J., Polo, Jose M., Ramialison, Mirana
Published in Journal of molecular and cellular cardiology (01.02.2022)
Published in Journal of molecular and cellular cardiology (01.02.2022)
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Cell Type of Origin Dictates the Route to Pluripotency
Nefzger, Christian M., Rossello, Fernando J., Chen, Joseph, Liu, Xiaodong, Knaupp, Anja S., Firas, Jaber, Paynter, Jacob M., Pflueger, Jahnvi, Buckberry, Sam, Lim, Sue Mei, Williams, Brenda, Alaei, Sara, Faye-Chauhan, Keshav, Petretto, Enrico, Nilsson, Susan K., Lister, Ryan, Ramialison, Mirana, Powell, David R., Rackham, Owen J.L., Polo, Jose M.
Published in Cell reports (Cambridge) (05.12.2017)
Published in Cell reports (Cambridge) (05.12.2017)
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Indirect Mechanisms of Transcription Factor‐Mediated Gene Regulation during Cell Fate Changes
Larcombe, Michael R., Hsu, Sheng, Polo, Jose M., Knaupp, Anja S.
Published in Genetics & genomics next (01.12.2022)
Published in Genetics & genomics next (01.12.2022)
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Nucleocytoplasmic Coagulation: An Injury-Induced Aggregation Event that Disulfide Crosslinks Proteins and Facilitates Their Removal by Plasmin
Samson, Andre L., Knaupp, Anja S., Sashindranath, Maithili, Borg, Rachael J., Au, Amanda E.-L., Cops, Elisa J., Saunders, Helen M., Cody, Stephen H., McLean, Catriona A., Nowell, Cameron J., Hughes, Victoria A., Bottomley, Stephen P., Medcalf, Robert L.
Published in Cell reports (Cambridge) (25.10.2012)
Published in Cell reports (Cambridge) (25.10.2012)
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A Versatile Strategy for Isolating a Highly Enriched Population of Intestinal Stem Cells
Nefzger, Christian M., Jardé, Thierry, Rossello, Fernando J., Horvay, Katja, Knaupp, Anja S., Powell, David R., Chen, Joseph, Abud, Helen E., Polo, Jose M.
Published in Stem cell reports (08.03.2016)
Published in Stem cell reports (08.03.2016)
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TINC— A Method to Dissect Regulatory Complexes at Single-Locus Resolution— Reveals an Extensive Protein Complex at the Nanog Promoter
Knaupp, Anja S., Mohenska, Monika, Larcombe, Michael R., Ford, Ethan, Lim, Sue Mei, Wong, Kayla, Chen, Joseph, Firas, Jaber, Huang, Cheng, Liu, Xiaodong, Nguyen, Trung, Sun, Yu B.Y., Holmes, Melissa L., Tripathi, Pratibha, Pflueger, Jahnvi, Rossello, Fernando J., Schröder, Jan, Davidson, Kathryn C., Nefzger, Christian M., Das, Partha P., Haigh, Jody J., Lister, Ryan, Schittenhelm, Ralf B., Polo, Jose M.
Published in Stem cell reports (08.12.2020)
Published in Stem cell reports (08.12.2020)
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Intestinal stem cell aging signature reveals a reprogramming strategy to enhance regenerative potential
Nefzger, Christian M., Jardé, Thierry, Srivastava, Akanksha, Schroeder, Jan, Rossello, Fernando J., Horvay, Katja, Prasko, Mirsada, Paynter, Jacob M., Chen, Joseph, Weng, Chen-Fang, Sun, Yu B. Y., Liu, Xiaodong, Chan, Eva, Deshpande, Nikita, Chen, Xiaoli, Li, Y. Jinhua, Pflueger, Jahnvi, Engel, Rebekah M., Knaupp, Anja S., Tsyganov, Kirill, Nilsson, Susan K., Lister, Ryan, Rackham, Owen J. L., Abud, Helen E., Polo, Jose M.
Published in npj Regenerative medicine (16.06.2022)
Published in npj Regenerative medicine (16.06.2022)
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Fine Tuning of Canonical Wnt Stimulation Enhances Differentiation of Pluripotent Stem Cells Independent of β‐Catenin‐Mediated T‐Cell Factor Signaling
Chen, Joseph, Nefzger, Christian M., Rossello, Fernando J., Sun, Yu B.Y., Lim, Sue Mei, Liu, Xiaodong, de Boer, Suzan, Knaupp, Anja S., Li, Jinhua, Davidson, Kathryn C., Polo, Jose M., Barberi, Tiziano
Published in Stem cells (Dayton, Ohio) (01.06.2018)
Published in Stem cells (Dayton, Ohio) (01.06.2018)
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Oxidation of an Exposed Methionine Instigates the Aggregation of Glyceraldehyde-3-phosphate Dehydrogenase
Samson, Andre L., Knaupp, Anja S., Kass, Itamar, Kleifeld, Oded, Marijanovic, Emilia M., Hughes, Victoria A., Lupton, Chris J., Buckle, Ashley M., Bottomley, Stephen P., Medcalf, Robert L.
Published in The Journal of biological chemistry (26.09.2014)
Published in The Journal of biological chemistry (26.09.2014)
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Reprogramming roadmap reveals route to human induced trophoblast stem cells
Liu, Xiaodong, Ouyang, John F, Rossello, Fernando J, Tan, Jia Ping, Davidson, Kathryn C, Valdes, Daniela S, Schröder, Jan, Sun, Yu B Y, Chen, Joseph, Knaupp, Anja S, Sun, Guizhi, Chy, Hun S, Huang, Ziyi, Pflueger, Jahnvi, Firas, Jaber, Tano, Vincent, Buckberry, Sam, Paynter, Jacob M, Larcombe, Michael R, Poppe, Daniel, Choo, Xin Yi, O'Brien, Carmel M, Pastor, William A, Chen, Di, Leichter, Anna L, Naeem, Haroon, Tripathi, Pratibha, Das, Partha P, Grubman, Alexandra, Powell, David R, Laslett, Andrew L, David, Laurent, Nilsson, Susan K, Clark, Amander T, Lister, Ryan, Nefzger, Christian M, Martelotto, Luciano G, Rackham, Owen J L, Polo, Jose M
Published in Nature (London) (01.10.2020)
Published in Nature (London) (01.10.2020)
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Kinetic Instability of the Serpin Z α1-Antitrypsin Promotes Aggregation
Knaupp, Anja S., Levina, Vita, Robertson, Amy L., Pearce, Mary C., Bottomley, Stephen P.
Published in Journal of molecular biology (01.02.2010)
Published in Journal of molecular biology (01.02.2010)
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