Evolution of regulatory networks associated with traits under selection in cichlids
Mehta, Tarang K, Koch, Christopher, Nash, Will, Knaack, Sara A, Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
Published in Genome Biology (08.01.2021)
Published in Genome Biology (08.01.2021)
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The single-cell transcriptome program of nodule development cellular lineages in Medicago truncatula
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Published in Cell reports (Cambridge) (27.02.2024)
Published in Cell reports (Cambridge) (27.02.2024)
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Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula
Knaack, Sara A, Conde, Daniel, Chakraborty, Sanhita, Balmant, Kelly M, Irving, Thomas B, Maia, Lucas Gontijo Silva, Triozzi, Paolo M, Dervinis, Christopher, Pereira, Wendell J, Maeda, Junko, Schmidt, Henry W, Ané, Jean-Michel, Kirst, Matias, Roy, Sushmita
Published in BMC biology (09.11.2022)
Published in BMC biology (09.11.2022)
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A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network Components
Knaack, Sara A., Siahpirani, Alireza Fotuhi, Roy, Sushmita
Published in Cancer informatics (01.01.2014)
Published in Cancer informatics (01.01.2014)
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Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus
Conde, Daniel, Triozzi, Paolo M, Pereira, Wendell J, Schmidt, Henry W, Balmant, Kelly M, Knaack, Sara A, Redondo-López, Arturo, Roy, Sushmita, Dervinis, Christopher, Kirst, Matias
Published in Development (Cambridge) (01.11.2022)
Published in Development (Cambridge) (01.11.2022)
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Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies
Koch, Christopher, Konieczka, Jay, Delorey, Toni, Lyons, Ana, Socha, Amanda, Davis, Kathleen, Knaack, Sara A., Thompson, Dawn, O'Shea, Erin K., Regev, Aviv, Roy, Sushmita
Published in Cell systems (24.05.2017)
Published in Cell systems (24.05.2017)
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Journal Article
Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus
Conde, Daniel, Triozzi, Paolo M., Pereira, Wendell J., Schmidt, Henry W., Balmant, Kelly M., Knaack, Sara A., Redondo-López, Arturo, Roy, Sushmita, Dervinis, Christopher, Kirst, Matias
Published in Development (Cambridge) (17.10.2022)
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Published in Development (Cambridge) (17.10.2022)
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A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network Components
Knaack, Sara A, Siahpirani, Alireza Fotuhi, Roy, Sushmita
Published in Cancer informatics (01.01.2014)
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Published in Cancer informatics (01.01.2014)
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Multimodal analysis reveals genes driving neuronal maturation in the primate prefrontal cortex
Gao, Yu, Dong, Qiping, Arachchilage, Kalpana Hanthanan, Risgaard, Ryan, Sheng, Jie, Syed, Moosa, Schmidt, Danielle K, Jin, Ting, Liu, Shuang, Knaack, Sara A, Doherty, Dan, Glass, Ian, Levine, Jon E, Wang, Daifeng, Chang, Qiang, Zhao, Xinyu, Sousa, Andre Mm
Published in bioRxiv : the preprint server for biology (26.10.2023)
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Published in bioRxiv : the preprint server for biology (26.10.2023)
Journal Article
Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula
Knaack, Sara A, Conde, Daniel, Chakraborty, Sanhita, Balmant, Kelly M, Irving, Thomas B, Lucas Gontijo Silva Maia, Triozzi, Paolo M, Dervinis, Christopher, Pereira, Wendell J, Maeda, Junko, Schmidt, Henry W, Jean-Michel, Ane, Kirst, Matias, Roy, Sushmita
Published in bioRxiv (15.04.2022)
Published in bioRxiv (15.04.2022)
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Paper
Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade
Pereira, Wendell J, Knaack, Sara A, Conde, Daniel, Chakraborty, Sanhita, Folk, Ryan A, Triozzi, Paolo M, Balmant, Kelly M, Dervinis, Christopher, Schmidt, Henry W, Jean-Michel, Ane, Roy, Sushmita, Kirst, Matias
Published in bioRxiv (29.07.2021)
Published in bioRxiv (29.07.2021)
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Paper
Evolution of regulatory networks associated with traits under selection in cichlids
Mehta, Tarang K, Koch, Christopher, Nash, Will, Knaack, Sara A, Padhmanand Sudhakar, Marton Olbei, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
Published in bioRxiv (17.04.2020)
Published in bioRxiv (17.04.2020)
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