Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility
Kuriata, Aleksander, Iglesias, Valentin, Pujols, Jordi, Kurcinski, Mateusz, Kmiecik, Sebastian, Ventura, Salvador
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
Blaszczyk, Maciej, Kurcinski, Mateusz, Kouza, Maksim, Wieteska, Lukasz, Debinski, Aleksander, Kolinski, Andrzej, Kmiecik, Sebastian
Published in Methods (San Diego, Calif.) (15.01.2016)
Published in Methods (San Diego, Calif.) (15.01.2016)
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Journal Article
Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained Docking
Zalewski, Mateusz, Kmiecik, Sebastian, Koliński, Michał
Published in Molecules (Basel, Switzerland) (30.05.2021)
Published in Molecules (Basel, Switzerland) (30.05.2021)
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Journal Article
Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models
Kmiecik, Sebastian, Kouza, Maksim, Badaczewska-Dawid, Aleksandra E, Kloczkowski, Andrzej, Kolinski, Andrzej
Published in International journal of molecular sciences (06.11.2018)
Published in International journal of molecular sciences (06.11.2018)
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Journal Article
Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study
Kouza, Maksim, Co, Nguyen Truong, Li, Mai Suan, Kmiecik, Sebastian, Kolinski, Andrzej, Kloczkowski, Andrzej, Buhimschi, Irina Alexandra
Published in The Journal of chemical physics (07.06.2018)
Published in The Journal of chemical physics (07.06.2018)
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Journal Article
Characterization of protein-folding pathways by reduced-space modeling
Kmiecik, Sebastian, Kolinski, Andrzej
Published in Proceedings of the National Academy of Sciences - PNAS (24.07.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (24.07.2007)
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Journal Article
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields
Ciemny, Maciej Pawel, Badaczewska-Dawid, Aleksandra Elzbieta, Pikuzinska, Monika, Kolinski, Andrzej, Kmiecik, Sebastian
Published in International journal of molecular sciences (31.01.2019)
Published in International journal of molecular sciences (31.01.2019)
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Journal Article
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
Kuriata, Aleksander, Gierut, Aleksandra Maria, Oleniecki, Tymoteusz, Ciemny, Maciej Paweł, Kolinski, Andrzej, Kurcinski, Mateusz, Kmiecik, Sebastian
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Menthol- and thymol-based ciprofloxacin derivatives against Mycobacterium tuberculosis: in vitro activity, lipophilicity, and computational studies
Szulczyk, Daniel, Woziński, Mateusz, Koliński, Michał, Kmiecik, Sebastian, Głogowska, Agnieszka, Augustynowicz-Kopeć, Ewa, Dobrowolski, Michał A, Roszkowski, Piotr, Struga, Marta, Ciura, Krzesimir
Published in Scientific reports (28.09.2023)
Published in Scientific reports (28.09.2023)
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Journal Article
Novel Tetrazole-Based Antimicrobial Agents Targeting Clinical Bacteria Strains: Exploring the Inhibition of Staphylococcus aureus DNA Topoisomerase IV and Gyrase
Roszkowski, Piotr, Szymańska-Majchrzak, Jolanta, Koliński, Michał, Kmiecik, Sebastian, Wrzosek, Małgorzata, Struga, Marta, Szulczyk, Daniel
Published in International journal of molecular sciences (29.12.2021)
Published in International journal of molecular sciences (29.12.2021)
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Journal Article
Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model
Pulawski, Wojciech, Jamroz, Michal, Kolinski, Michal, Kolinski, Andrzej, Kmiecik, Sebastian
Published in Journal of chemical information and modeling (28.11.2016)
Published in Journal of chemical information and modeling (28.11.2016)
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Journal Article
A3DyDB: exploring structural aggregation propensities in the yeast proteome
Garcia-Pardo, Javier, Badaczewska-Dawid, Aleksandra E, Pintado-Grima, Carlos, Iglesias, Valentín, Kuriata, Aleksander, Kmiecik, Sebastian, Ventura, Salvador
Published in Microbial cell factories (16.09.2023)
Published in Microbial cell factories (16.09.2023)
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Journal Article
The Effect of Conjugation of Ciprofloxacin and Moxifloxacin with Fatty Acids on Their Antibacterial and Anticancer Activity
Chrzanowska, Alicja, Struga, Marta, Roszkowski, Piotr, Koliński, Michał, Kmiecik, Sebastian, Jałbrzykowska, Karolina, Zabost, Anna, Stefańska, Joanna, Augustynowicz-Kopeć, Ewa, Wrzosek, Małgorzata, Bielenica, Anna
Published in International journal of molecular sciences (02.06.2022)
Published in International journal of molecular sciences (02.06.2022)
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Journal Article
Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility
Gil-Garcia, Marcos, Bañó-Polo, Manuel, Varejão, Nathalia, Jamroz, Michal, Kuriata, Aleksander, Díaz-Caballero, Marta, Lascorz, Jara, Morel, Bertrand, Navarro, Susanna, Reverter, David, Kmiecik, Sebastian, Ventura, Salvador
Published in Molecular pharmaceutics (04.09.2018)
Published in Molecular pharmaceutics (04.09.2018)
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Journal Article
The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap Analogues
Kurpiejewski, Karol, Piecyk, Karolina, Lukaszewicz, Maciej, Kamel, Karol, Chmurski, Kazimierz, Kmiecik, Sebastian, Jankowska-Anyszka, Marzena
Published in Pharmaceuticals (Basel, Switzerland) (01.05.2024)
Published in Pharmaceuticals (Basel, Switzerland) (01.05.2024)
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