Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
Kloster, Michael, Burfeid-Castellanos, Andrea M, Langenkämper, Daniel, Nattkemper, Tim W, Beszteri, Bánk
Published in PloS one (24.02.2023)
Published in PloS one (24.02.2023)
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Journal Article
Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
Burfeid-Castellanos, Andrea M, Martín-Martín, Rafael P, Kloster, Michael, Angulo-Preckler, Carlos, Avila, Conxita, Beszteri, Bánk
Published in PloS one (30.04.2021)
Published in PloS one (30.04.2021)
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Journal Article
Morphometry of the diatom Fragilariopsis kerguelensis from Southern Ocean sediment: High-throughput measurements show second morphotype occurring during glacials
Kloster, Michael, Kauer, Gerhard, Esper, Oliver, Fuchs, Nike, Beszteri, Bánk
Published in Marine micropaleontology (01.09.2018)
Published in Marine micropaleontology (01.09.2018)
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Journal Article
Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
Mayombo, Ntambwe Albert Serge, Dani, Mimoza, Kloster, Michael, Vidaković, Danijela, Buchner, Dominik, Burfeid-Castellanos, Andrea M., Beszteri, Bánk
Published in Frontiers in ecology and evolution (11.09.2024)
Published in Frontiers in ecology and evolution (11.09.2024)
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Journal Article
A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples
Burfeid-Castellanos, Andrea M., Kloster, Michael, Beszteri, Sára, Postel, Ute, Spyra, Marzena, Zurowietz, Martin, Nattkemper, Tim W., Beszteri, Bánk
Published in Water (Basel) (01.10.2022)
Published in Water (Basel) (01.10.2022)
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Journal Article
Temporal changes in size distributions of the Southern Ocean diatom Fragilariopsis kerguelensis through high-throughput microscopy of sediment trap samples
Kloster, Michael, Rigual-Hernández, Andrés S., Armand, Leanne K., Kauer, Gerhard, Trull, Thomas W., Beszteri, Bánk
Published in Diatom research (03.07.2019)
Published in Diatom research (03.07.2019)
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Journal Article
Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells
Monsees, Indra, Turzynski, Victoria, Esser, Sarah P, Soares, André, Timmermann, Lara I, Weidenbach, Katrin, Banas, Jarno, Kloster, Michael, Beszteri, Bánk, Schmitz, Ruth A, Probst, Alexander J
Published in mSystems (22.02.2022)
Published in mSystems (22.02.2022)
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Journal Article
Erratum for Monsees et al., "Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells"
Monsees, Indra, Turzynski, Victoria, Esser, Sarah P, Soares, André, Timmermann, Lara I, Weidenbach, Katrin, Banas, Jarno, Kloster, Michael, Beszteri, Bánk, Schmitz, Ruth A, Probst, Alexander J
Published in mSystems (26.04.2022)
Published in mSystems (26.04.2022)
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Journal Article
Deep learning-based diatom taxonomy on virtual slides
Kloster, Michael, Langenkämper, Daniel, Zurowietz, Martin, Beszteri, Bánk, Nattkemper, Tim W.
Published in Scientific reports (02.09.2020)
Published in Scientific reports (02.09.2020)
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Journal Article
Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
Mayombo, Ntambwe Albert Serge, Burfeid-Castellanos, Andrea M., Vermiert, Anna-Maria, Pimentel, Iris Madge, Rehsen, Philipp M., Dani, Mimoza, Jasinski, Christina, Spyra, Marzena Agata, Kloster, Michael, Vidaković, Danijela, Buchner, Dominik, Beszteri, Bánk
Published in The Science of the total environment (15.09.2024)
Published in The Science of the total environment (15.09.2024)
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Journal Article
Both hydrology and physicochemistry influence diatom morphometry
Burfeid-Castellanos, Andrea M., Kloster, Michael, Cambra, Jaume, Beszteri, Bánk
Published in Diatom research (01.10.2020)
Published in Diatom research (01.10.2020)
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Journal Article
Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
Vidaković, Danijela, Mayombo, Ntambwe Albert Serge, Burfeid Castellanos, Andrea, Kloster, Michael, Beszteri, Bank
Published in Diatom research (02.10.2023)
Published in Diatom research (02.10.2023)
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Journal Article
Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
Michael Kloster, Andrea M Burfeid-Castellanos, Daniel Langenkämper, Tim W Nattkemper, Bánk Beszteri
Published in PloS one (01.01.2023)
Published in PloS one (01.01.2023)
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Journal Article
Large-Scale Permanent Slide Imaging and Image Analysis for Diatom Morphometrics
Kloster, Michael, Esper, Oliver, Kauer, Gerhard, Beszteri, Bánk
Published in Applied sciences (28.03.2017)
Published in Applied sciences (28.03.2017)
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Journal Article
Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis: a case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy1
Beszteri, Bánk, Allen, Claire, Almandoz, Gastón O., Armand, Leanne, Barcena, María Ángeles, Cantzler, Hannelore, Crosta, Xavier, Esper, Oliver, Jordan, Richard W., Kauer, Gerhard, Klaas, Christine, Kloster, Michael, Leventer, Amy, Pike, Jennifer, Rigual Hernández, Andrés S., Wetherbee, R.
Published in Journal of phycology (01.10.2018)
Published in Journal of phycology (01.10.2018)
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Journal Article
Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
Kloster, Michael, Burfeid-Castellanos, Andrea M, Langenkämper, Daniel, Nattkemper, Tim W, Beszteri, Bánk
Published in bioRxiv (16.07.2022)
Published in bioRxiv (16.07.2022)
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Paper
Label-free Raman microspectroscopy for identifying virocells
Monsees, Indra, Turzynski, Victoria, Esser, Sarah P, Soares, André, Timmermann, Lara I, Weidenbach, Katrin, Banas, Jarno, Kloster, Michael, Beszteri, Bánk, Schmitz, Ruth A, Probst, Alexander J
Published in bioRxiv (26.09.2021)
Published in bioRxiv (26.09.2021)
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Paper