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Phylogenetic analysis of migration, differentiation, and class switching in B cells
Hoehn, Kenneth B., Pybus, Oliver G., Kleinstein, Steven H.
Published in PLoS computational biology (01.04.2022)
Published in PLoS computational biology (01.04.2022)
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Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity
Wang, Meng, Patsenker, Jonathan, Li, Henry, Kluger, Yuval, Kleinstein, Steven H
Published in Nucleic acids research (25.01.2024)
Published in Nucleic acids research (25.01.2024)
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Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles
Gadala-Maria, Daniel, Yaari, Gur, Uduman, Mohamed, Kleinstein, Steven H.
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2015)
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Heterogeneity of meningeal B cells reveals a lymphopoietic niche at the CNS borders
Brioschi, Simone, Wang, Wei-Le, Peng, Vincent, Wang, Meng, Shchukina, Irina, Greenberg, Zev J., Bando, Jennifer K., Jaeger, Natalia, Czepielewski, Rafael S., Swain, Amanda, Mogilenko, Denis A., Beatty, Wandy L., Bayguinov, Peter, Fitzpatrick, James A. J., Schuettpelz, Laura G., Fronick, Catrina C., Smirnov, Igor, Kipnis, Jonathan, Shapiro, Virginia S., Wu, Gregory F., Gilfillan, Susan, Cella, Marina, Artyomov, Maxim N., Kleinstein, Steven H., Colonna, Marco
Published in Science (American Association for the Advancement of Science) (23.07.2021)
Published in Science (American Association for the Advancement of Science) (23.07.2021)
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Phosphoenolpyruvate Is a Metabolic Checkpoint of Anti-tumor T Cell Responses
Ho, Ping-Chih, Bihuniak, Jessica Dauz, Macintyre, Andrew N., Staron, Matthew, Liu, Xiaojing, Amezquita, Robert, Tsui, Yao-Chen, Cui, Guoliang, Micevic, Goran, Perales, Jose C., Kleinstein, Steven H., Abel, E. Dale, Insogna, Karl L., Feske, Stefan, Locasale, Jason W., Bosenberg, Marcus W., Rathmell, Jeffrey C., Kaech, Susan M.
Published in Cell (10.09.2015)
Published in Cell (10.09.2015)
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Migrant memory B cells secrete luminal antibody in the vagina
Oh, Ji Eun, Iijima, Norifumi, Song, Eric, Lu, Peiwen, Klein, Jonathan, Jiang, Ruoyi, Kleinstein, Steven H., Iwasaki, Akiko
Published in Nature (London) (01.07.2019)
Published in Nature (London) (01.07.2019)
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Salmonella Infection Drives Promiscuous B Cell Activation Followed by Extrafollicular Affinity Maturation
Di Niro, Roberto, Lee, Seung-Joo, Vander Heiden, Jason A., Elsner, Rebecca A., Trivedi, Nikita, Bannock, Jason M., Gupta, Namita T., Kleinstein, Steven H., Vigneault, Francois, Gilbert, Tamara J., Meffre, Eric, McSorley, Stephen J., Shlomchik, Mark J.
Published in Immunity (Cambridge, Mass.) (21.07.2015)
Published in Immunity (Cambridge, Mass.) (21.07.2015)
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pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
Vander Heiden, Jason A., Yaari, Gur, Uduman, Mohamed, Stern, Joel N.H., O’Connor, Kevin C., Hafler, David A., Vigneault, Francois, Kleinstein, Steven H.
Published in Bioinformatics (Oxford, England) (01.07.2014)
Published in Bioinformatics (Oxford, England) (01.07.2014)
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Age-associated B cells are heterogeneous and dynamic drivers of autoimmunity in mice
Nickerson, Kevin M., Smita, Shuchi, Hoehn, Kenneth B., Marinov, Anthony D., Thomas, Kayla B., Kos, Justin T., Yang, Yi, Bastacky, Sheldon I., Watson, Corey T., Kleinstein, Steven H., Shlomchik, Mark J.
Published in The Journal of experimental medicine (01.05.2023)
Published in The Journal of experimental medicine (01.05.2023)
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Differential Expression of Ly6C and T-bet Distinguish Effector and Memory Th1 CD4 + Cell Properties during Viral Infection
Marshall, Heather D., Chandele, Anmol, Jung, Yong Woo, Meng, Hailong, Poholek, Amanda C., Parish, Ian A., Rutishauser, Rachel, Cui, Weiguo, Kleinstein, Steven H., Craft, Joe, Kaech, Susan M.
Published in Immunity (Cambridge, Mass.) (28.10.2011)
Published in Immunity (Cambridge, Mass.) (28.10.2011)
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Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination
Hoehn, Kenneth B., Vander Heiden, Jason A., Zhou, Julian Q., Lunter, Gerton, Pybus, Oliver G., Kleinstein, Steven H.
Published in Proceedings of the National Academy of Sciences - PNAS (05.11.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (05.11.2019)
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Germinal Center B Cell and T Follicular Helper Cell Development Initiates in the Interfollicular Zone
Kerfoot, Steven M., Yaari, Gur, Patel, Jaymin R., Johnson, Kody L., Gonzalez, David G., Kleinstein, Steven H., Haberman, Ann M.
Published in Immunity (Cambridge, Mass.) (24.06.2011)
Published in Immunity (Cambridge, Mass.) (24.06.2011)
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CD23 + IgG1 + memory B cells are poised to switch to pathogenic IgE production in food allergy
Ota, Miyo, Hoehn, Kenneth B, Fernandes-Braga, Weslley, Ota, Takayuki, Aranda, Carlos J, Friedman, Sara, Miranda-Waldetario, Mariana G C, Redes, Jamie, Suprun, Maria, Grishina, Galina, Sampson, Hugh A, Malbari, Alefiyah, Kleinstein, Steven H, Sicherer, Scott H, Curotto de Lafaille, Maria A
Published in Science translational medicine (07.02.2024)
Published in Science translational medicine (07.02.2024)
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B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes
Stern, Joel N H, Yaari, Gur, Vander Heiden, Jason A, Church, George, Donahue, William F, Hintzen, Rogier Q, Huttner, Anita J, Laman, Jon D, Nagra, Rashed M, Nylander, Alyssa, Pitt, David, Ramanan, Sriram, Siddiqui, Bilal A, Vigneault, Francois, Kleinstein, Steven H, Hafler, David A, O'Connor, Kevin C
Published in Science translational medicine (06.08.2014)
Published in Science translational medicine (06.08.2014)
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