A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits
Foley, Christopher N, Staley, James R, Breen, Philip G, Sun, Benjamin B, Kirk, Paul D W, Burgess, Stephen, Howson, Joanna M M
Published in Nature communications (03.02.2021)
Published in Nature communications (03.02.2021)
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Journal Article
The RNA landscape of the human placenta in health and disease
Gong, Sungsam, Gaccioli, Francesca, Dopierala, Justyna, Sovio, Ulla, Cook, Emma, Volders, Pieter-Jan, Martens, Lennart, Kirk, Paul D W, Richardson, Sylvia, Smith, Gordon C S, Charnock-Jones, D Stephen
Published in Nature communications (11.05.2021)
Published in Nature communications (11.05.2021)
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Journal Article
A Bayesian mixture modelling approach for spatial proteomics
Crook, Oliver M, Mulvey, Claire M, Kirk, Paul D W, Lilley, Kathryn S, Gatto, Laurent
Published in PLoS computational biology (01.11.2018)
Published in PLoS computational biology (01.11.2018)
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Journal Article
Multivariate moment closure techniques for stochastic kinetic models
Lakatos, Eszter, Ale, Angelique, Kirk, Paul D W, Stumpf, Michael P H
Published in The Journal of chemical physics (07.09.2015)
Published in The Journal of chemical physics (07.09.2015)
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Journal Article
A Bayesian semi-parametric model for thermal proteome profiling
Fang, Siqi, Kirk, Paul D W, Bantscheff, Marcus, Lilley, Kathryn S, Crook, Oliver M
Published in Communications biology (29.06.2021)
Published in Communications biology (29.06.2021)
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Journal Article
Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm
Darkins, Robert, Cooke, Emma J, Ghahramani, Zoubin, Kirk, Paul D W, Wild, David L, Savage, Richard S
Published in PloS one (02.04.2013)
Published in PloS one (02.04.2013)
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Journal Article
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
Cooke, Emma J, Savage, Richard S, Kirk, Paul D W, Darkins, Robert, Wild, David L
Published in BMC bioinformatics (13.10.2011)
Published in BMC bioinformatics (13.10.2011)
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Journal Article
A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection
Crook, Oliver M, Geladaki, Aikaterini, Nightingale, Daniel J H, Vennard, Owen L, Lilley, Kathryn S, Gatto, Laurent, Kirk, Paul D W
Published in PLoS computational biology (01.11.2020)
Published in PLoS computational biology (01.11.2020)
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Journal Article
Model selection in systems biology depends on experimental design
Silk, Daniel, Kirk, Paul D W, Barnes, Chris P, Toni, Tina, Stumpf, Michael P H
Published in PLoS computational biology (01.06.2014)
Published in PLoS computational biology (01.06.2014)
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Journal Article
Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis
Kirk, Paul D W, Witkover, Aviva, Courtney, Alan, Lewin, Alexandra M, Wait, Robin, Stumpf, Michael P H, Richardson, Sylvia, Taylor, Graham P, Bangham, Charles R M
Published in Retrovirology (12.10.2011)
Published in Retrovirology (12.10.2011)
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Journal Article
Genetic feature engineering enables characterisation of shared risk factors in immune-mediated diseases
Burren, Oliver S, Reales, Guillermo, Wong, Limy, Bowes, John, Lee, James C, Barton, Anne, Lyons, Paul A, Smith, Kenneth G C, Thomson, Wendy, Kirk, Paul D W, Wallace, Chris
Published in Genome medicine (25.11.2020)
Published in Genome medicine (25.11.2020)
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Journal Article
Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death
Gisby, Jack, Clarke, Candice L, Medjeral-Thomas, Nicholas, Malik, Talat H, Papadaki, Artemis, Mortimer, Paige M, Buang, Norzawani B, Lewis, Shanice, Pereira, Marie, Toulza, Frederic, Fagnano, Ester, Mawhin, Marie-Anne, Dutton, Emma E, Tapeng, Lunnathaya, Richard, Arianne C, Kirk, Paul Dw, Behmoaras, Jacques, Sandhu, Eleanor, McAdoo, Stephen P, Prendecki, Maria F, Pickering, Matthew C, Botto, Marina, Willicombe, Michelle, Thomas, David C, Peters, James E
Published in eLife (11.03.2021)
Published in eLife (11.03.2021)
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Journal Article
Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling
Filippi, Sarah, Barnes, Chris P., Kirk, Paul D.W., Kudo, Takamasa, Kunida, Katsuyuki, McMahon, Siobhan S., Tsuchiya, Takaho, Wada, Takumi, Kuroda, Shinya, Stumpf, Michael P.H.
Published in Cell reports (Cambridge) (14.06.2016)
Published in Cell reports (Cambridge) (14.06.2016)
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