Mechanism of PARP1 Elongation Reaction Revealed by Molecular Modeling
Pushkarev, Sergey V., Kirilin, Evgeny M., Švedas, Vytas K., Nilov, Dmitry K.
Published in Biochemistry (Moscow) (01.07.2024)
Published in Biochemistry (Moscow) (01.07.2024)
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Computational design of a pH stable enzyme: understanding molecular mechanism of penicillin acylase's adaptation to alkaline conditions
Suplatov, Dmitry, Panin, Nikolay, Kirilin, Evgeny, Shcherbakova, Tatyana, Kudryavtsev, Pavel, Svedas, Vytas
Published in PloS one (24.06.2014)
Published in PloS one (24.06.2014)
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Analysis of Multiple Drug Resistance Mechanism in Different Types of Soft Tissue Sarcomas: Assessment of the Expression of ABC-Transporters, MVP, YB-1, and Analysis of Their Correlation with Chemosensitivity of Cancer Cells
Moiseeva, Natalia I, Laletina, Lidia A, Fetisov, Timur I, Makhmudova, Leyla F, Manikaylo, Angelika E, Fomina, Liliya Y, Burov, Denis A, Lesovaya, Ekaterina A, Bokhyan, Beniamin Y, Zinovieva, Victoria Y, Vilkova, Alice S, Mekheda, Larisa V, Kozlov, Nikolay A, Scherbakov, Alexander M, Kirilin, Evgeny M, Belitsky, Gennady A, Yakubovskaya, Marianna G, Kirsanov, Kirill I
Published in International journal of molecular sciences (16.03.2022)
Published in International journal of molecular sciences (16.03.2022)
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Soft Tissue Sarcoma Study: Association of Genetic Alterations in the Apoptosis Pathways with Chemoresistance to Doxorubicin
Kirilin, Evgeny M, Fetisov, Timur I, Moiseeva, Natalia I, Lesovaya, Ekaterina A, Laletina, Lidia A, Makhmudova, Leyla F, Manikaylo, Angelika E, Fomina, Liliya Y, Burov, Denis A, Bokhyan, Beniamin Yu, Zinovieva, Victoria Y, Vilkova, Alice S, Mekheda, Larisa V, Kozlov, Nikolay A, Scherbakov, Alexander M, Belitsky, Gennady A, Švedas, Vytas, Kirsanov, Kirill I, Yakubovskaya, Marianna G
Published in Cancers (01.04.2022)
Published in Cancers (01.04.2022)
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Promoting transparency and reproducibility in enhanced molecular simulations
Bonomi, Massimiliano, Bussi, Giovanni, Camilloni, Carlo, Tribello, Gareth A, Banáš, Pavel, Barducci, Alessandro, Bernetti, Mattia, Bolhuis, Peter G, Bottaro, Sandro, Branduardi, Davide, Capelli, Riccardo, Carloni, Paolo, Ceriotti, Michele, Cesari, Andrea, Chen, Haochuan, Chen, Wei, Colizzi, Francesco, De, Sandip, De La Pierre, Marco, Donadio, Davide, Drobot, Viktor, Ensing, Bernd, Ferguson, Andrew L, Filizola, Marta, Fraser, James S, Fu, Haohao, Gasparotto, Piero, Gervasio, Francesco Luigi, Giberti, Federico, Gil-Ley, Alejandro, Giorgino, Toni, Heller, Gabriella T, Hocky, Glen M, Iannuzzi, Marcella, Invernizzi, Michele, Jelfs, Kim E, Jussupow, Alexander, Kirilin, Evgeny, Laio, Alessandro, Limongelli, Vittorio, Lindorff-Larsen, Kresten, Löhr, Thomas, Marinelli, Fabrizio, Martin-Samos, Layla, Masetti, Matteo, Meyer, Ralf, Michaelides, Angelos, Molteni, Carla, Morishita, Tetsuya, Nava, Marco, Paissoni, Cristina, Papaleo, Elena, Parrinello, Michele, Pfaendtner, Jim, Piaggi, Pablo, Piccini, GiovanniMaria, Pietropaolo, Adriana, Pietrucci, Fabio, Pipolo, Silvio, Provasi, Davide, Quigley, David, Raiteri, Paolo, Raniolo, Stefano, Rydzewski, Jakub, Salvalaglio, Matteo, Gabriele Cesare Sosso, Spiwok, Vojtěch, Šponer, Jiří, Swenson, David W H, Tiwary, Pratyush, Valsson, Omar, Vendruscolo, Michele, Voth, Gregory A, White, Andrew
Published in Nature methods (01.08.2019)
Published in Nature methods (01.08.2019)
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Zebra: a web server for bioinformatic analysis of diverse protein families
Suplatov, Dmitry, Kirilin, Evgeny, Takhaveev, Vakil, Švedas, Vytas
Published in Journal of biomolecular structure & dynamics (02.11.2014)
Published in Journal of biomolecular structure & dynamics (02.11.2014)
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PLUMED Plugin Integration into High Performance Pmemd Program for Enhanced Molecular Dynamics Simulations
Published in Supercomputing frontiers and innovations
(01.12.2021)
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Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity
Suplatov, Dmitry, Shalaeva, Daria, Kirilin, Evgeny, Arzhanik, Vladimir, Švedas, Vytas
Published in Journal of biomolecular structure & dynamics (02.01.2014)
Published in Journal of biomolecular structure & dynamics (02.01.2014)
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