Equitability, mutual information, and the maximal information coefficient
Kinney, Justin B., Atwal, Gurinder S.
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
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Journal Article
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
Shi, Junwei, Wang, Eric, Milazzo, Joseph P, Wang, Zihua, Kinney, Justin B, Vakoc, Christopher R
Published in Nature biotechnology (01.06.2015)
Published in Nature biotechnology (01.06.2015)
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Journal Article
Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization
Senturk, Serif, Shirole, Nitin H, Nowak, Dawid G, Corbo, Vincenzo, Pal, Debjani, Vaughan, Alexander, Tuveson, David A, Trotman, Lloyd C, Kinney, Justin B, Sordella, Raffaella
Published in Nature communications (22.02.2017)
Published in Nature communications (22.02.2017)
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Journal Article
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
MELNIKOV, Alexandre, MURUGAN, Anand, KELLIS, Manolis, LANDER, Eric S, MIKKELSEN, Tarjei S, XIAOLAN ZHANG, TESILEANU, Tiberiu, LI WANG, ROGOV, Peter, FEIZI, Soheil, GNIRKE, Andreas, CALLAN, Curtis G, KINNEY, Justin B
Published in Nature biotechnology (01.03.2012)
Published in Nature biotechnology (01.03.2012)
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Journal Article
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves
Adams, Rhys M, Mora, Thierry, Walczak, Aleksandra M, Kinney, Justin B
Published in eLife (30.12.2016)
Published in eLife (30.12.2016)
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Journal Article
Specificity, synergy, and mechanisms of splice-modifying drugs
Ishigami, Yuma, Wong, Mandy S, Martí-Gómez, Carlos, Ayaz, Andalus, Kooshkbaghi, Mahdi, Hanson, Sonya M, McCandlish, David M, Krainer, Adrian R, Kinney, Justin B
Published in Nature communications (29.02.2024)
Published in Nature communications (29.02.2024)
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Journal Article
Mapping DNA sequence to transcription factor binding energy in vivo
Barnes, Stephanie L, Belliveau, Nathan M, Ireland, William T, Kinney, Justin B, Phillips, Rob
Published in PLoS computational biology (01.02.2019)
Published in PLoS computational biology (01.02.2019)
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Journal Article
Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression
Sheu, Yi-Jun, Kinney, Justin B, Lengronne, Armelle, Pasero, Philippe, Stillman, Bruce
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
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Journal Article
A Transcription Factor Addiction in Leukemia Imposed by the MLL Promoter Sequence
Lu, Bin, Klingbeil, Olaf, Tarumoto, Yusuke, Somerville, Tim D.D., Huang, Yu-Han, Wei, Yiliang, Wai, Dorothy C., Low, Jason K.K., Milazzo, Joseph P., Wu, Xiaoli S., Cao, Zhendong, Yan, Xiaomei, Demerdash, Osama E., Huang, Gang, Mackay, Joel P., Kinney, Justin B., Shi, Junwei, Vakoc, Christopher R.
Published in Cancer cell (10.12.2018)
Published in Cancer cell (10.12.2018)
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Journal Article
Deciphering the regulatory genome of Escherichia coli , one hundred promoters at a time
Ireland, William T, Beeler, Suzannah M, Flores-Bautista, Emanuel, McCarty, Nicholas S, Röschinger, Tom, Belliveau, Nathan M, Sweredoski, Michael J, Moradian, Annie, Kinney, Justin B, Phillips, Rob
Published in eLife (21.09.2020)
Published in eLife (21.09.2020)
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Journal Article
Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis
Ipsaro, Jonathan J, Shen, Chen, Arai, Eri, Xu, Yali, Kinney, Justin B, Joshua-Tor, Leemor, Vakoc, Christopher R, Shi, Junwei
Published in PloS one (23.02.2017)
Published in PloS one (23.02.2017)
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Journal Article
Reply to Reshef et al.: Falsifiability or bust
Kinney, Justin B, Atwal, Gurinder S
Published in Proceedings of the National Academy of Sciences - PNAS (19.08.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (19.08.2014)
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Journal Article
Measuring cis-regulatory energetics in living cells using allelic manifolds
Forcier, Talitha L, Ayaz, Andalus, Gill, Manraj S, Jones, Daniel, Phillips, Rob, Kinney, Justin B
Published in eLife (20.12.2018)
Published in eLife (20.12.2018)
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Journal Article
The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer
Wang, Eric, Kawaoka, Shinpei, Roe, Jae-Seok, Shi, Junwei, Hohmann, Anja F, Xu, Yali, Bhagwat, Anand S, Suzuki, Yutaka, Kinney, Justin B, Vakoc, Christopher R
Published in eLife (28.04.2015)
Published in eLife (28.04.2015)
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Journal Article
Reply to Murrell et al.: Noise matters
Kinney, Justin B, Atwal, Gurinder S
Published in Proceedings of the National Academy of Sciences - PNAS (27.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (27.05.2014)
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Journal Article
Massively Parallel Assays and Quantitative Sequence-Function Relationships
Kinney, Justin B, McCandlish, David M
Published in Annual review of genomics and human genetics (31.08.2019)
Published in Annual review of genomics and human genetics (31.08.2019)
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Journal Article
Selection for Protein Stability Enriches for Epistatic Interactions
Posfai, Anna, Zhou, Juannan, Plotkin, Joshua B, Kinney, Justin B, McCandlish, David M
Published in Genes (21.08.2018)
Published in Genes (21.08.2018)
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