Identification and characterization of hippuristanol-resistant mutants reveals eIF4A1 dependencies within mRNA 5′ leader regions
Steinberger, Jutta, Shen, Leo, J. Kiniry, Stephen, Naineni, Sai Kiran, Cencic, Regina, Amiri, Mehdi, Aboushawareb, Sarah A E, Chu, Jennifer, Maïga, Rayelle Itoua, Yachnin, Brahm J, Robert, Francis, Sonenberg, Nahum, Baranov, Pavel V, Pelletier, Jerry
Published in Nucleic acids research (25.09.2020)
Published in Nucleic acids research (25.09.2020)
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Journal Article
Impact of eIF2α phosphorylation on the translational landscape of mouse embryonic stem cells
Amiri, Mehdi, Kiniry, Stephen J., Possemato, Anthony P., Mahmood, Niaz, Basiri, Tayebeh, Dufour, Catherine R., Tabatabaei, Negar, Deng, Qiyun, Bellucci, Michael A., Harwalkar, Keerthana, Stokes, Matthew P., Giguère, Vincent, Kaufman, Randal J., Yamanaka, Yojiro, Baranov, Pavel V., Tahmasebi, Soroush, Sonenberg, Nahum
Published in Cell reports (Cambridge) (23.01.2024)
Published in Cell reports (Cambridge) (23.01.2024)
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Journal Article
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response
Andreev, Dmitry E, Arnold, Maxim, Kiniry, Stephen J, Loughran, Gary, Michel, Audrey M, Rachinskii, Dmitrii, Baranov, Pavel V
Published in eLife (22.06.2018)
Published in eLife (22.06.2018)
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Journal Article
Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers
Zaheed, Oza, Kiniry, Stephen J., Baranov, Pavel V., Dean, Kellie
Published in Frontiers in cell and developmental biology (12.08.2021)
Published in Frontiers in cell and developmental biology (12.08.2021)
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Journal Article
Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling
Gerresheim, Gesche K, Bathke, Jochen, Michel, Audrey M, Andreev, Dmitri E, Shalamova, Lyudmila A, Rossbach, Oliver, Hu, Pan, Glebe, Dieter, Fricke, Markus, Marz, Manja, Goesmann, Alexander, Kiniry, Stephen J, Baranov, Pavel V, Shatsky, Ivan N, Niepmann, Michael
Published in International journal of molecular sciences (15.03.2019)
Published in International journal of molecular sciences (15.03.2019)
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Journal Article
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data
Kiniry, Stephen J, Judge, Ciara E, Michel, Audrey M, Baranov, Pavel V
Published in Nucleic acids research (02.07.2021)
Published in Nucleic acids research (02.07.2021)
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Journal Article
eIF2α controls memory consolidation via excitatory and somatostatin neurons
Sharma, Vijendra, Sood, Rapita, Khlaifia, Abdessattar, Eslamizade, Mohammad Javad, Hung, Tzu-Yu, Lou, Danning, Asgarihafshejani, Azam, Lalzar, Maya, Kiniry, Stephen J, Stokes, Matthew P, Cohen, Noah, Nelson, Alissa J, Abell, Kathryn, Possemato, Anthony P, Gal-Ben-Ari, Shunit, Truong, Vinh T, Wang, Peng, Yiannakas, Adonis, Saffarzadeh, Fatemeh, Cuello, A Claudio, Nader, Karim, Kaufman, Randal J, Costa-Mattioli, Mauro, Baranov, Pavel V, Quintana, Albert, Sanz, Elisenda, Khoutorsky, Arkady, Lacaille, Jean-Claude, Rosenblum, Kobi, Sonenberg, Nahum
Published in Nature (London) (15.10.2020)
Published in Nature (London) (15.10.2020)
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Journal Article
Computational methods for ribosome profiling data analysis
Kiniry, Stephen J, Michel, Audrey M, Baranov, Pavel V
Published in Wiley interdisciplinary reviews. RNA (01.05.2020)
Published in Wiley interdisciplinary reviews. RNA (01.05.2020)
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Journal Article
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data
Kiniry, Stephen J, O’Connor, Patrick B F, Michel, Audrey M, Baranov, Pavel V
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Evaluating ribosomal frameshifting in CCR5 mRNA decoding
Khan, Yousuf A, Loughran, Gary, Steckelberg, Anna-Lena, Brown, Katherine, Kiniry, Stephen J, Stewart, Hazel, Baranov, Pavel V, Kieft, Jeffrey S, Firth, Andrew E, Atkins, John F
Published in Nature (London) (01.04.2022)
Published in Nature (London) (01.04.2022)
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Journal Article
Selection Shapes Synonymous Stop Codon Use in Mammals
Seoighe, Cathal, Kiniry, Stephen J., Peters, Andrew, Baranov, Pavel V., Yang, Haixuan
Published in Journal of molecular evolution (01.09.2020)
Published in Journal of molecular evolution (01.09.2020)
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Journal Article
GWIPS-viz: 2018 update
Michel, Audrey M, Kiniry, Stephen J, O'Connor, Patrick B F, Mullan, James P, Baranov, Pavel V
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF
Loughran, Gary, Zhdanov, Alexander V., Mikhaylova, Maria S., Rozov, Fedor N., Datskevich, Petr N., Kovalchuk, Sergey I., Serebryakova, Marina V., Kiniry, Stephen J., Michel, Audrey M., O’Connor, Patrick B. F., Papkovsky, Dmitri B., Atkins, John F., Baranov, Pavel V., Shatsky, Ivan N., Andreev, Dmitry E.
Published in Proceedings of the National Academy of Sciences - PNAS (06.10.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (06.10.2020)
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Journal Article
The GWIPS-viz Browser
Kiniry, Stephen J, Michel, Audrey M, Baranov, Pavel V
Published in Current protocols in bioinformatics (01.06.2018)
Published in Current protocols in bioinformatics (01.06.2018)
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Journal Article
AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation
Yordanova, Martina M, Loughran, Gary, Zhdanov, Alexander V, Mariotti, Marco, Kiniry, Stephen J, O'Connor, Patrick B F, Andreev, Dmitry E, Tzani, Ioanna, Saffert, Paul, Michel, Audrey M, Gladyshev, Vadim N, Papkovsky, Dmitry B, Atkins, John F, Baranov, Pavel V
Published in Nature (London) (18.01.2018)
Published in Nature (London) (18.01.2018)
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Journal Article
Selection shapes synonymous stop codon use in mammals
Seoighe, Cathal, Kiniry, Stephen J, Peters, Andrew, Baranov, Pavel V, Yang, Haixuan
Published in bioRxiv (14.08.2019)
Published in bioRxiv (14.08.2019)
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Paper
eIF2a controls memory consolidation via excitatory and somatostatin neurons
Sharma, Vijendra, Sood, Rapita, Khlaifia, Abdessattar, Eslamizade, Mohammad Javad, Hung, Tzu-Yu, Lou, Danning, Asgarihafshejani, Azam, Lalzar, Maya, Kiniry, Stephen J, Stokes, Matthew P, Cohen, Noah, Nelson, Alissa J, Abell, Kathryn, Possemato, Anthony P, Gal-Ben-Ari, Shunit, Truong, Vinh T, Wang, Peng, Yiannakas, Adonis, Saffarzadeh, Fatemeh, Cuello, A Claudio, Nader, Karim, Kaufman, Randal J, Costa-Mattioli, Mauro, Baranov, Pavel V, Quintana, Albert, Sanz, Elisenda, Khoutorsky, Arkady, Lacaille, Jean-Claude, Rosenblum, Kobi, Sonenberg, Nahum
Published in Nature (London) (15.10.2020)
Published in Nature (London) (15.10.2020)
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Journal Article