Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
King, Zachary A, Dräger, Andreas, Ebrahim, Ali, Sonnenschein, Nikolaus, Lewis, Nathan E, Palsson, Bernhard O
Published in PLoS computational biology (01.08.2015)
Published in PLoS computational biology (01.08.2015)
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Journal Article
The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function
Ghatak, Sankha, King, Zachary A, Sastry, Anand, Palsson, Bernhard O
Published in Nucleic acids research (18.03.2019)
Published in Nucleic acids research (18.03.2019)
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Journal Article
Constraint-based models predict metabolic and associated cellular functions
Bordbar, Aarash, Monk, Jonathan M, King, Zachary A, Palsson, Bernhard O
Published in Nature reviews. Genetics (01.02.2014)
Published in Nature reviews. Genetics (01.02.2014)
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Journal Article
COBRAme: A computational framework for genome-scale models of metabolism and gene expression
Lloyd, Colton J, Ebrahim, Ali, Yang, Laurence, King, Zachary A, Catoiu, Edward, O'Brien, Edward J, Liu, Joanne K, Palsson, Bernhard O
Published in PLoS computational biology (05.07.2018)
Published in PLoS computational biology (05.07.2018)
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Journal Article
The Escherichia coli transcriptome mostly consists of independently regulated modules
Sastry, Anand V, Gao, Ye, Szubin, Richard, Hefner, Ying, Xu, Sibei, Kim, Donghyuk, Choudhary, Kumari Sonal, Yang, Laurence, King, Zachary A, Palsson, Bernhard O
Published in Nature communications (04.12.2019)
Published in Nature communications (04.12.2019)
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Journal Article
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
King, Zachary A, Lu, Justin, Dräger, Andreas, Miller, Philip, Federowicz, Stephen, Lerman, Joshua A, Ebrahim, Ali, Palsson, Bernhard O, Lewis, Nathan E
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Lachance, Jean-Christophe, Lloyd, Colton J, Monk, Jonathan M, Yang, Laurence, Sastry, Anand V, Seif, Yara, Palsson, Bernhard O, Rodrigue, Sébastien, Feist, Adam M, King, Zachary A, Jacques, Pierre-Étienne
Published in PLoS computational biology (01.04.2019)
Published in PLoS computational biology (01.04.2019)
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Journal Article
Next-generation genome-scale models for metabolic engineering
King, Zachary A, Lloyd, Colton J, Feist, Adam M, Palsson, Bernhard O
Published in Current opinion in biotechnology (01.12.2015)
Published in Current opinion in biotechnology (01.12.2015)
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Journal Article
Modeling the multi-scale mechanisms of macromolecular resource allocation
Yang, Laurence, Yurkovich, James T, King, Zachary A, Palsson, Bernhard O
Published in Current opinion in microbiology (01.10.2018)
Published in Current opinion in microbiology (01.10.2018)
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Journal Article
Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data
Kumar, Avi, Mitchener, Jack, King, Zachary A, Metallo, Christian M
Published in BMC bioinformatics (10.07.2020)
Published in BMC bioinformatics (10.07.2020)
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Journal Article
In Vitro and In Vivo Evaluation of PEDOT Microelectrodes for Neural Stimulation and Recording
Venkatraman, Subramaniam, Hendricks, Jeffrey, King, Zachary A., Sereno, Andrew J., Richardson-Burns, Sarah, Martin, David, Carmena, Jose M.
Published in IEEE transactions on neural systems and rehabilitation engineering (01.06.2011)
Published in IEEE transactions on neural systems and rehabilitation engineering (01.06.2011)
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Journal Article
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism
Cheng, Chuankai, O'Brien, Edward J, McCloskey, Douglas, Utrilla, Jose, Olson, Connor, LaCroix, Ryan A, Sandberg, Troy E, Feist, Adam M, Palsson, Bernhard O, King, Zachary A
Published in PLoS computational biology (01.06.2019)
Published in PLoS computational biology (01.06.2019)
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Journal Article
Enzyme promiscuity shapes adaptation to novel growth substrates
Guzmán, Gabriela I, Sandberg, Troy E, LaCroix, Ryan A, Nyerges, Ákos, Papp, Henrietta, de Raad, Markus, King, Zachary A, Hefner, Ying, Northen, Trent R, Notebaart, Richard A, Pál, Csaba, Palsson, Bernhard O, Papp, Balázs, Feist, Adam M
Published in Molecular systems biology (01.04.2019)
Published in Molecular systems biology (01.04.2019)
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Journal Article
economic and technical evaluation of microalgal biofuels
Stephens, Evan, Ross, Ian L, King, Zachary, Mussgnug, Jan H, Kruse, Olaf, Posten, Clemens, Borowitzka, Michael A, Hankamer, Ben
Published in Nature biotechnology (01.02.2010)
Published in Nature biotechnology (01.02.2010)
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Journal Article
Impaired prenatal motor axon development necessitates early therapeutic intervention in severe SMA
Kong, Lingling, Valdivia, David O, Simon, Christian M, Hassinan, Cera W, Delestrée, Nicolas, Ramos, Daniel M, Park, Jae Hong, Pilato, Celeste M, Xu, Xixi, Crowder, Melissa, Grzyb, Chloe C, King, Zachary A, Petrillo, Marco, Swoboda, Kathryn J, Davis, Crystal, Lutz, Cathleen M, Stephan, Alexander H, Zhao, Xin, Weetall, Marla, Naryshkin, Nikolai A, Crawford, Thomas O, Mentis, George Z, Sumner, Charlotte J
Published in Science translational medicine (27.01.2021)
Published in Science translational medicine (27.01.2021)
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Journal Article
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity
Phaneuf, Patrick V, Yurkovich, James T, Heckmann, David, Wu, Muyao, Sandberg, Troy E, King, Zachary A, Tan, Justin, Palsson, Bernhard O, Feist, Adam M
Published in BMC genomics (25.07.2020)
Published in BMC genomics (25.07.2020)
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Journal Article
The genetic basis for adaptation of model-designed syntrophic co-cultures
Lloyd, Colton J, King, Zachary A, Sandberg, Troy E, Hefner, Ying, Olson, Connor A, Phaneuf, Patrick V, O'Brien, Edward J, Sanders, Jon G, Salido, Rodolfo A, Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory, Knight, Rob, Feist, Adam M
Published in PLoS computational biology (01.03.2019)
Published in PLoS computational biology (01.03.2019)
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Journal Article
Racial/ethnic disparities in the risk of intracerebral hemorrhage recurrence
Leasure, Audrey C, King, Zachary A, Torres-Lopez, Victor, Murthy, Santosh B, Kamel, Hooman, Shoamanesh, Ashkan, Al-Shahi Salman, Rustam, Rosand, Jonathan, Ziai, Wendy C, Hanley, Daniel F, Woo, Daniel, Matouk, Charles C, Sansing, Lauren H, Falcone, Guido J, Sheth, Kevin N
Published in Neurology (21.01.2020)
Published in Neurology (21.01.2020)
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