Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
Rubin, Adam J., Parker, Kevin R., Satpathy, Ansuman T., Qi, Yanyan, Wu, Beijing, Ong, Alvin J., Mumbach, Maxwell R., Ji, Andrew L., Kim, Daniel S., Cho, Seung Woo, Zarnegar, Brian J., Greenleaf, William J., Chang, Howard Y., Khavari, Paul A.
Published in Cell (10.01.2019)
Published in Cell (10.01.2019)
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The Kipoi repository accelerates community exchange and reuse of predictive models for genomics
Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S, Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien
Published in Nature biotechnology (01.06.2019)
Published in Nature biotechnology (01.06.2019)
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Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation
Rubin, Adam J, Barajas, Brook C, Furlan-Magaril, Mayra, Lopez-Pajares, Vanessa, Mumbach, Maxwell R, Howard, Imani, Kim, Daniel S, Boxer, Lisa D, Cairns, Jonathan, Spivakov, Mikhail, Wingett, Steven W, Shi, Minyi, Zhao, Zhixin, Greenleaf, William J, Kundaje, Anshul, Snyder, Michael, Chang, Howard Y, Fraser, Peter, Khavari, Paul A
Published in Nature genetics (01.10.2017)
Published in Nature genetics (01.10.2017)
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Journal Article
Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics
Ronsein, Graziella E., Pamir, Nathalie, von Haller, Priska D., Kim, Daniel S., Oda, Michael N., Jarvik, Gail P., Vaisar, Tomas, Heinecke, Jay W.
Published in Journal of proteomics (15.01.2015)
Published in Journal of proteomics (15.01.2015)
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Actionable, Pathogenic Incidental Findings in 1,000 Participants’ Exomes
Dorschner, Michael O., Amendola, Laura M., Turner, Emily H., Robertson, Peggy D., Shirts, Brian H., Gallego, Carlos J., Bennett, Robin L., Jones, Kelly L., Tokita, Mari J., Bennett, James T., Kim, Jerry H., Rosenthal, Elisabeth A., Kim, Daniel S., Tabor, Holly K., Bamshad, Michael J., Motulsky, Arno G., Scott, C. Ronald, Pritchard, Colin C., Walsh, Tom, Burke, Wylie, Raskind, Wendy H., Byers, Peter, Hisama, Fuki M., Nickerson, Deborah A., Jarvik, Gail P.
Published in American journal of human genetics (03.10.2013)
Published in American journal of human genetics (03.10.2013)
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Effect of delay in presentation on rate of perforation in children with appendicitis
Narsule, Chaitan K., MD, Kahle, Eden J., MD, Kim, Daniel S., MD, Anderson, Angela C., MD, Luks, Francois I., MD, PhD
Published in The American journal of emergency medicine (01.10.2011)
Published in The American journal of emergency medicine (01.10.2011)
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Association of exome sequences with plasma C-reactive protein levels in >9000 participants
Schick, Ursula M, Auer, Paul L, Bis, Joshua C, Lin, Honghuang, Wei, Peng, Pankratz, Nathan, Lange, Leslie A, Brody, Jennifer, Stitziel, Nathan O, Kim, Daniel S, Carlson, Christopher S, Fornage, Myriam, Haessler, Jeffery, Hsu, Li, Jackson, Rebecca D, Kooperberg, Charles, Leal, Suzanne M, Psaty, Bruce M, Boerwinkle, Eric, Tracy, Russell, Ardissino, Diego, Shah, Svati, Willer, Cristen, Loos, Ruth, Melander, Olle, Mcpherson, Ruth, Hovingh, Kees, Reilly, Muredach, Watkins, Hugh, Girelli, Domenico, Fontanillas, Pierre, Chasman, Daniel I, Gabriel, Stacey B, Gibbs, Richard, Nickerson, Deborah A, Kathiresan, Sekar, Peters, Ulrike, Dupuis, Josée, Wilson, James G, Rich, Stephen S, Morrison, Alanna C, Benjamin, Emelia J, Gross, Myron D, Reiner, Alex P
Published in Human molecular genetics (15.01.2015)
Published in Human molecular genetics (15.01.2015)
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Loci identified by a genome‐wide association study of carotid artery stenosis in the eMERGE network
Palmer, Melody R., Kim, Daniel S., Crosslin, David R., Stanaway, Ian B., Rosenthal, Elisabeth A., Carrell, David S., Cronkite, David J., Gordon, Adam, Du, Xiaomeng, Li, Yatong K., Williams, Marc S., Weng, Chunhua, Feng, Qiping, Li, Rongling, Pendergrass, Sarah A., Hakonarson, Hakon, Fasel, David, Sohn, Sunghwan, Sleiman, Patrick, Handelman, Samuel K., Speliotes, Elizabeth, Kullo, Iftikhar J., Larson, Eric B., Jarvik, Gail P.
Published in Genetic epidemiology (01.02.2021)
Published in Genetic epidemiology (01.02.2021)
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Journal Article
Postoperative electroencephalographic seizures are associated with deficits in executive function and social behaviors at 4 years of age following cardiac surgery in infancy
Gaynor, J. William, MD, Jarvik, Gail P., MD, PhD, Gerdes, Marsha, PhD, Kim, Daniel S., BS, Rajagopalan, Ramakrishnan, MS, Bernbaum, Judy, MD, Wernovsky, Gil, MD, Nicolson, Susan C., MD, Spray, Thomas L., MD, Clancy, Robert R., MD
Published in The Journal of thoracic and cardiovascular surgery (01.07.2013)
Published in The Journal of thoracic and cardiovascular surgery (01.07.2013)
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Journal Article
Targeting Mitochondrial Damage as a Therapeutic for Ileal Crohn’s Disease
Alula, Kibrom M., Jackson, Dakota N., Smith, Andrew D., Kim, Daniel S., Turner, Kevin, Odstrcil, Elizabeth, Kaipparettu, Benny A., Dassopoulos, Themistocles, Venuprasad, K., Feagins, Linda A., Theiss, Arianne L.
Published in Cells (Basel, Switzerland) (29.05.2021)
Published in Cells (Basel, Switzerland) (29.05.2021)
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Journal Article
Novel gene-by-environment interactions: APOB and NPC1L1 variants affect the relationship between dietary and total plasma cholesterol[S]
Kim, Daniel S., Burt, Amber A., Ranchalis, Jane E., Jarvik, Ella R., Rosenthal, Elisabeth A., Hatsukami, Thomas S., Furlong, Clement E., Jarvik, Gail P.
Published in Journal of lipid research (01.05.2013)
Published in Journal of lipid research (01.05.2013)
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Journal Article
Ethical Issues in Psychopharmacology
Beck, Nataly S, Kim, Daniel S. J, Dunn, Laura B
Published in Focus (American Psychiatric Publishing) (01.01.2021)
Published in Focus (American Psychiatric Publishing) (01.01.2021)
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