Discovery of unfixed endogenous retrovirus insertions in diverse human populations
Wildschutte, Julia Halo, Williams, Zachary H., Montesion, Meagan, Subramanian, Ravi P., Kidd, Jeffrey M., Coffin, John M.
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
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The genomic landscape of polymorphic human nuclear mitochondrial insertions
Dayama, Gargi, Emery, Sarah B, Kidd, Jeffrey M, Mills, Ryan E
Published in Nucleic acids research (10.11.2014)
Published in Nucleic acids research (10.11.2014)
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Ancient European dog genomes reveal continuity since the Early Neolithic
Botigué, Laura R., Song, Shiya, Scheu, Amelie, Gopalan, Shyamalika, Pendleton, Amanda L., Oetjens, Matthew, Taravella, Angela M., Seregély, Timo, Zeeb-Lanz, Andrea, Arbogast, Rose-Marie, Bobo, Dean, Daly, Kevin, Unterländer, Martina, Burger, Joachim, Kidd, Jeffrey M., Veeramah, Krishna R.
Published in Nature communications (18.07.2017)
Published in Nature communications (18.07.2017)
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Distance from sub-Saharan Africa predicts mutational load in diverse human genomes
Henn, Brenna M., Botigué, Laura R., Peischl, Stephan, Dupanloup, Isabelle, Lipatov, Mikhail, Maples, Brian K., Martin, Alicia R., Musharoff, Shaila, Cann, Howard, Snyder, Michael P., Excoffier, Laurent, Kidd, Jeffrey M., Bustamante, Carlos D.
Published in Proceedings of the National Academy of Sciences - PNAS (26.01.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (26.01.2016)
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Personalized copy number and segmental duplication maps using next-generation sequencing
Eichler, Evan E, Alkan, Can, Kidd, Jeffrey M, Marques-Bonet, Tomas, Aksay, Gozde, Antonacci, Francesca, Hormozdiari, Fereydoun, Kitzman, Jacob O, Baker, Carl, Malig, Maika, Mutlu, Onur, Sahinalp, S Cenk, Gibbs, Richard A
Published in Nature genetics (01.10.2009)
Published in Nature genetics (01.10.2009)
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Modeling Human Population Separation History Using Physically Phased Genomes
Song, Shiya, Sliwerska, Elzbieta, Emery, Sarah, Kidd, Jeffrey M
Published in Genetics (Austin) (01.01.2017)
Published in Genetics (Austin) (01.01.2017)
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Variable patterns of retrotransposition in different HeLa strains provide mechanistic insights into SINE RNA mobilization processes
Moldovan, John B, Kopera, Huira C, Liu, Ying, Garcia-Canadas, Marta, Catalina, Purificacion, Leone, Paola E, Sanchez, Laura, Kitzman, Jacob O, Kidd, Jeffrey M, Garcia-Perez, Jose Luis, Moran, John V
Published in Nucleic acids research (22.07.2024)
Published in Nucleic acids research (22.07.2024)
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Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females
Poznik, G. David, Henn, Brenna M., Yee, Muh-Ching, Sliwerska, Elzbieta, Euskirchen, Ghia M., Lin, Alice A., Snyder, Michael, Quintana-Murci, Lluis, Kidd, Jeffrey M., Underhill, Peter A., Bustamante, Carlos D.
Published in Science (American Association for the Advancement of Science) (02.08.2013)
Published in Science (American Association for the Advancement of Science) (02.08.2013)
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Hunter-gatherer genomic diversity suggests a southern African origin for modern humans
Henn, Brenna M, Gignoux, Christopher R, Jobin, Matthew, Granka, Julie M, Macpherson, J.M, Kidd, Jeffrey M, RodrÃguez-Botigué, Laura, Ramachandran, Sohini, Hon, Lawrence, Brisbin, Abra, Lin, Alice A, Underhill, Peter A, Comas, David, Kidd, Kenneth K, Norman, Paul J, Parham, Peter, Bustamante, Carlos D, Mountain, Joanna L, Feldman, Marcus W
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2011)
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Systematic assessment of copy number variant detection via genome-wide SNP genotyping
Cooper, Gregory M, Zerr, Troy, Kidd, Jeffrey M, Eichler, Evan E, Nickerson, Deborah A
Published in Nature genetics (01.10.2008)
Published in Nature genetics (01.10.2008)
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Journal Article
Variation of BMP3 contributes to dog breed skull diversity
Schoenebeck, Jeffrey J, Hutchinson, Sarah A, Byers, Alexandra, Beale, Holly C, Carrington, Blake, Faden, Daniel L, Rimbault, Maud, Decker, Brennan, Kidd, Jeffrey M, Sood, Raman, Boyko, Adam R, Fondon, 3rd, John W, Wayne, Robert K, Bustamante, Carlos D, Ciruna, Brian, Ostrander, Elaine A
Published in PLoS genetics (01.08.2012)
Published in PLoS genetics (01.08.2012)
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Population stratification of a common APOBEC gene deletion polymorphism
Kidd, Jeffrey M, Newman, Tera L, Tuzun, Eray, Kaul, Rajinder, Eichler, Evan E
Published in PLoS genetics (01.04.2007)
Published in PLoS genetics (01.04.2007)
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Journal Article
Spliced integrated retrotransposed element (SpIRE) formation in the human genome
Larson, Peter A, Moldovan, John B, Jasti, Naveen, Kidd, Jeffrey M, Beck, Christine R, Moran, John V
Published in PLoS biology (05.03.2018)
Published in PLoS biology (05.03.2018)
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Bimodal Expression Patterns, and Not Viral Burst Sizes, Predict the Effects of Vpr on HIV-1 Proviral Populations in Jurkat Cells
Atindaana, Edmond, Kissi-Twum, Abena, Emery, Sarah, Burnett, Cleo, Pitcher, Jake, Visser, Myra, Kidd, Jeffrey M, Telesnitsky, Alice
Published in mBio (26.04.2022)
Published in mBio (26.04.2022)
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Structural diversity and African origin of the 17q21.31 inversion polymorphism
Steinberg, Karyn Meltz, Antonacci, Francesca, Sudmant, Peter H, Kidd, Jeffrey M, Campbell, Catarina D, Vives, Laura, Malig, Maika, Scheinfeldt, Laura, Beggs, William, Ibrahim, Muntaser, Lema, Godfrey, Nyambo, Thomas B, Omar, Sabah A, Bodo, Jean-Marie, Froment, Alain, Donnelly, Michael P, Kidd, Kenneth K, Tishkoff, Sarah A, Eichler, Evan E
Published in Nature genetics (01.08.2012)
Published in Nature genetics (01.08.2012)
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High-resolution human genome structure by single-molecule analysis
Teague, Brian, Waterman, Michael S, Goldstein, Steven, Potamousis, Konstantinos, Zhou, Shiguo, Reslewic, Susan, Sarkar, Deepayan, Valouev, Anton, Churas, Christopher, Kidd, Jeffrey M, Kohn, Scott, Runnheim, Rodney, Lamers, Casey, Forrest, Dan, Newton, Michael A, Eichler, Evan E, Kent-First, Marijo, Surti, Urvashi, Livny, Miron, Schwartz, David C
Published in Proceedings of the National Academy of Sciences - PNAS (15.06.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (15.06.2010)
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Journal Article
A burst of segmental duplications in the genome of the African great ape ancestor
Eichler, Evan E, Marques-Bonet, Tomas, Kidd, Jeffrey M, Ventura, Mario, Graves, Tina A, Cheng, Ze, Hillier, LaDeana W, Jiang, Zhaoshi, Baker, Carl, Malfavon-Borja, Ray, Fulton, Lucinda A, Alkan, Can, Aksay, Gozde, Girirajan, Santhosh, Siswara, Priscillia, Chen, Lin, Cardone, Maria Francesca, Navarro, Arcadi, Mardis, Elaine R, Wilson, Richard K
Published in Nature (12.02.2009)
Published in Nature (12.02.2009)
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