Protein folding and de novo protein design for biotechnological applications
Khoury, George A, Smadbeck, James, Kieslich, Chris A, Floudas, Christodoulos A
Published in Trends in biotechnology (Regular ed.) (01.02.2014)
Published in Trends in biotechnology (Regular ed.) (01.02.2014)
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Journal Article
Forcefield_PTM: Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications
Khoury, George A, Thompson, Jeff P, Smadbeck, James, Kieslich, Chris A, Floudas, Christodoulos A
Published in Journal of chemical theory and computation (10.12.2013)
Published in Journal of chemical theory and computation (10.12.2013)
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Journal Article
Forcefield_NCAA: Ab Initio Charge Parameters to Aid in the Discovery and Design of Therapeutic Proteins and Peptides with Unnatural Amino Acids and Their Application to Complement Inhibitors of the Compstatin Family
Khoury, George A, Smadbeck, James, Tamamis, Phanourios, Vandris, Andrew C, Kieslich, Chris A, Floudas, Christodoulos A
Published in ACS synthetic biology (19.12.2014)
Published in ACS synthetic biology (19.12.2014)
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Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double‐blind predictions during the CASP11 experiment
Khoury, George A., Smadbeck, James, Kieslich, Chris A., Koskosidis, Alexandra J., Guzman, Yannis A., Tamamis, Phanourios, Floudas, Christodoulos A.
Published in Proteins, structure, function, and bioinformatics (01.06.2017)
Published in Proteins, structure, function, and bioinformatics (01.06.2017)
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Journal Article
Princeton_TIGRESS: Protein geometry refinement using simulations and support vector machines
Khoury, George A., Tamamis, Phanourios, Pinnaduwage, Neesha, Smadbeck, James, Kieslich, Chris A., Floudas, Christodoulos A.
Published in Proteins, structure, function, and bioinformatics (01.05.2014)
Published in Proteins, structure, function, and bioinformatics (01.05.2014)
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Journal Article
WeFold: A coopetition for protein structure prediction
Khoury, George A., Liwo, Adam, Khatib, Firas, Zhou, Hongyi, Chopra, Gaurav, Bacardit, Jaume, Bortot, Leandro O., Faccioli, Rodrigo A., Deng, Xin, He, Yi, Krupa, Pawel, Li, Jilong, Mozolewska, Magdalena A., Sieradzan, Adam K., Smadbeck, James, Wirecki, Tomasz, Cooper, Seth, Flatten, Jeff, Xu, Kefan, Baker, David, Cheng, Jianlin, Delbem, Alexandre C. B., Floudas, Christodoulos A., Keasar, Chen, Levitt, Michael, Popović, Zoran, Scheraga, Harold A., Skolnick, Jeffrey, Crivelli, Silvia N., Players, Foldit
Published in Proteins, structure, function, and bioinformatics (01.09.2014)
Published in Proteins, structure, function, and bioinformatics (01.09.2014)
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Journal Article
Protein WISDOM: a workbench for in silico de novo design of biomolecules
Smadbeck, James, Peterson, Meghan B, Khoury, George A, Taylor, Martin S, Floudas, Christodoulos A
Published in Journal of visualized experiments (25.07.2013)
Published in Journal of visualized experiments (25.07.2013)
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Journal Article
New Compstatin Peptides Containing N‑Terminal Extensions and Non-Natural Amino Acids Exhibit Potent Complement Inhibition and Improved Solubility Characteristics
Gorham, Ronald D, Forest, David L, Khoury, George A, Smadbeck, James, Beecher, Consuelo N, Healy, Evangeline D, Tamamis, Phanourios, Archontis, Georgios, Larive, Cynthia K, Floudas, Christodoulos A, Radeke, Monte J, Johnson, Lincoln V, Morikis, Dimitrios
Published in Journal of medicinal chemistry (22.01.2015)
Published in Journal of medicinal chemistry (22.01.2015)
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Journal Article
Princeton_ TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double‐blind predictions during the CASP 11 experiment
Khoury, George A., Smadbeck, James, Kieslich, Chris A., Koskosidis, Alexandra J., Guzman, Yannis A., Tamamis, Phanourios, Floudas, Christodoulos A.
Published in Proteins, structure, function, and bioinformatics (01.06.2017)
Published in Proteins, structure, function, and bioinformatics (01.06.2017)
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Journal Article
Hydration free energies calculated using the AMBER ff03 charge model for natural and unnatural amino acids and multiple water models : Bio-systems Engineering 2014
KHOURY, George A, BHATIA, Nikita, FLOUDAS, Christodoulos A
Published in Computers & chemical engineering (2014)
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Published in Computers & chemical engineering (2014)
Journal Article
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
Keasar, Chen, McGuffin, Liam J., Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro Oliveira, Cao, Renzhi, Dhanasekaran, B. K., Dimas, Itzhel, Faccioli, Rodrigo Antonio, Faraggi, Eshel, Ganzynkowicz, Robert, Ghosh, Sambit, Ghosh, Soma, Giełdoń, Artur, Golon, Lukasz, He, Yi, Heo, Lim, Hou, Jie, Khan, Main, Khatib, Firas, Khoury, George A., Kieslich, Chris, Kim, David E., Krupa, Pawel, Lee, Gyu Rie, Li, Hongbo, Li, Jilong, Lipska, Agnieszka, Liwo, Adam, Maghrabi, Ali Hassan A., Mirdita, Milot, Mirzaei, Shokoufeh, Mozolewska, Magdalena A., Onel, Melis, Ovchinnikov, Sergey, Shah, Anand, Shah, Utkarsh, Sidi, Tomer, Sieradzan, Adam K., Ślusarz, Magdalena, Ślusarz, Rafal, Smadbeck, James, Tamamis, Phanourios, Trieber, Nicholas, Wirecki, Tomasz, Yin, Yanping, Zhang, Yang, Bacardit, Jaume, Baranowski, Maciej, Chapman, Nicholas, Cooper, Seth, Defelicibus, Alexandre, Flatten, Jeff, Koepnick, Brian, Popović, Zoran, Zaborowski, Bartlomiej, Baker, David, Cheng, Jianlin, Czaplewski, Cezary, Delbem, Alexandre Cláudio Botazzo, Floudas, Christodoulos, Kloczkowski, Andrzej, Ołdziej, Stanislaw, Levitt, Michael, Scheraga, Harold, Seok, Chaok, Söding, Johannes, Vishveshwara, Saraswathi, Xu, Dong, Crivelli, Silvia N.
Published in Scientific reports (02.07.2018)
Published in Scientific reports (02.07.2018)
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Journal Article
Protein folding andde novoprotein design for biotechnological applications
Khoury, George A, Smadbeck, James, Kieslich, Chris A, Floudas, Christodoulos A
Published in Trends in biotechnology (Regular ed.) (01.02.2014)
Published in Trends in biotechnology (Regular ed.) (01.02.2014)
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Journal Article
De Novo Design and Experimental Characterization of Ultrashort Self-Associating Peptides: e1003718
Smadbeck, James, Chan, Kiat Hwa, Khoury, George A, Xue, Bo, Robinson, Robert C, Hauser, Charlotte AE, Floudas, Christodoulos A
Published in PLoS computational biology (01.07.2014)
Published in PLoS computational biology (01.07.2014)
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