Exome sequencing identifies FANCM as a susceptibility gene for triple-negative breast cancer
Kiiski, Johanna I., Pelttari, Liisa M., Khan, Sofia, Freysteinsdottir, Edda S., Reynisdottir, Inga, Hart, Steven N., Shimelis, Hermela, Vilske, Sara, Kallioniemi, Anne, Schleutker, Johanna, Leminen, Arto, Bützow, Ralf, Blomqvist, Carl, Barkardottir, Rosa B., Couch, Fergus J., Aittomäki, Kristiina, Nevanlinna, Heli
Published in Proceedings of the National Academy of Sciences - PNAS (21.10.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (21.10.2014)
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Journal Article
Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer
Bova, G Steven, Liu, Wennuan, Laitinen, Sari, Khan, Sofia, Vihinen, Mauno, Kowalski, Jeanne, Yu, Guoqiang, Chen, Li, Ewing, Charles M, Eisenberger, Mario A, Carducci, Michael A, Nelson, William G, Yegnasubramanian, Srinivasan, Luo, Jun, Wang, Yue, Xu, Jianfeng, Isaacs, William B, Visakorpi, Tapio
Published in Nature medicine (01.05.2009)
Published in Nature medicine (01.05.2009)
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Journal Article
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data
Smolander, Johannes, Khan, Sofia, Singaravelu, Kalaimathy, Kauko, Leni, Lund, Riikka J, Laiho, Asta, Elo, Laura L
Published in BMC genomics (17.05.2021)
Published in BMC genomics (17.05.2021)
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Journal Article
Computational strategies for single-cell multi-omics integration
Adossa, Nigatu, Khan, Sofia, Rytkönen, Kalle T., Elo, Laura L.
Published in Computational and structural biotechnology journal (01.01.2021)
Published in Computational and structural biotechnology journal (01.01.2021)
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Journal Article
Polymorphism in interferon alpha/beta receptor contributes to glucocorticoid response and outcome of ARDS and COVID-19
Jalkanen, Juho, Khan, Sofia, Elima, Kati, Huttunen, Teppo, Wang, Ning, Hollmén, Maija, Elo, Laura L, Jalkanen, Sirpa
Published in Critical care (London, England) (16.03.2023)
Published in Critical care (London, England) (16.03.2023)
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Journal Article
Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data
Wang, Ning, Lysenkov, Vladislav, Orte, Katri, Kairisto, Veli, Aakko, Juhani, Khan, Sofia, Elo, Laura L
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
SNPs in lncRNA Regions and Breast Cancer Risk
Suvanto, Maija, Beesley, Jonathan, Blomqvist, Carl, Chenevix-Trench, Georgia, Khan, Sofia, Nevanlinna, Heli
Published in Frontiers in genetics (30.06.2020)
Published in Frontiers in genetics (30.06.2020)
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Journal Article
Using expression profiling data to identify human microRNA targets
Frey, Brendan J, Morris, Quaid D, Huang, Jim C, Babak, Tomas, Corson, Timothy W, Chua, Gordon, Khan, Sofia, Gallie, Brenda L, Hughes, Timothy R, Blencowe, Benjamin J
Published in Nature methods (01.12.2007)
Published in Nature methods (01.12.2007)
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Journal Article
Long Intergenic Noncoding RNA MIAT as a Regulator of Human Th17 Cell Differentiation
Khan, Mohd Moin, Khan, Meraj Hasan, Kalim, Ubaid Ullah, Khan, Sofia, Junttila, Sini, Paulin, Niklas, Kong, Lingjia, Rasool, Omid, Elo, Laura L., Lahesmaa, Riitta
Published in Frontiers in immunology (15.06.2022)
Published in Frontiers in immunology (15.06.2022)
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Journal Article
Germline variation in ADAMTSL1 is associated with prognosis following breast cancer treatment in young women
Kadalayil, Latha, Khan, Sofia, Nevanlinna, Heli, Fasching, Peter A, Couch, Fergus J, Hopper, John L, Liu, Jianjun, Maishman, Tom, Durcan, Lorraine, Gerty, Sue, Blomqvist, Carl, Rack, Brigitte, Janni, Wolfgang, Collins, Andrew, Eccles, Diana, Tapper, William
Published in Nature communications (21.11.2017)
Published in Nature communications (21.11.2017)
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Journal Article
Solanidine is a sensitive and specific dietary biomarker for CYP2D6 activity
Kiiski, Johanna I, Neuvonen, Mikko, Kurkela, Mika, Hirvensalo, Päivi, Hämäläinen, Kreetta, Tarkiainen, E Katriina, Sistonen, Johanna, Korhonen, Mari, Khan, Sofia, Orpana, Arto, Filppula, Anne M, Lehtonen, Marko, Niemi, Mikko
Published in Human genomics (01.02.2024)
Published in Human genomics (01.02.2024)
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Journal Article
A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis
Rafiq, Sajjad, Khan, Sofia, Tapper, William, Collins, Andrew, Upstill-Goddard, Rosanna, Gerty, Susan, Blomqvist, Carl, Aittomäki, Kristiina, Couch, Fergus J, Liu, Jianjun, Nevanlinna, Heli, Eccles, Diana
Published in PloS one (19.12.2014)
Published in PloS one (19.12.2014)
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Journal Article
Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature
Kelkka, Tiina, Savola, Paula, Bhattacharya, Dipabarna, Huuhtanen, Jani, Lönnberg, Tapio, Kankainen, Matti, Paalanen, Kirsi, Tyster, Mikko, Lepistö, Maija, Ellonen, Pekka, Smolander, Johannes, Eldfors, Samuli, Yadav, Bhagwan, Khan, Sofia, Koivuniemi, Riitta, Sjöwall, Christopher, Elo, Laura L, Lähdesmäki, Harri, Maeda, Yuka, Nishikawa, Hiroyashi, Leirisalo-Repo, Marjatta, Sokka-Isler, Tuulikki, Mustjoki, Satu
Published in Frontiers in immunology (19.11.2020)
Published in Frontiers in immunology (19.11.2020)
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