Ensembl Genomes 2020—enabling non-vertebrate genomic research
Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Comparative analysis of repeat content in plant genomes, large and small
Argentin, Joris, Bolser, Dan, Kersey, Paul J, Flicek, Paul
Published in Frontiers in plant science (14.07.2023)
Published in Frontiers in plant science (14.07.2023)
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Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
Brewer, Grace E., Clarkson, James J., Maurin, Olivier, Zuntini, Alexandre R., Barber, Vanessa, Bellot, Sidonie, Biggs, Nicola, Cowan, Robyn S., Davies, Nina M. J., Dodsworth, Steven, Edwards, Sara L., Eiserhardt, Wolf L., Epitawalage, Niroshini, Frisby, Sue, Grall, Aurélie, Kersey, Paul J., Pokorny, Lisa, Leitch, Ilia J., Forest, Félix, Baker, William J.
Published in Frontiers in plant science (18.09.2019)
Published in Frontiers in plant science (18.09.2019)
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Gramene 2016: comparative plant genomics and pathway resources
Tello-Ruiz, Marcela K, Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M, Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A, Huerta, Laura, Keays, Maria, Tang, Y Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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RNAcentral: an international database of ncRNA sequences
Petrov, Anton I, Kay, Simon J E, Gibson, Richard, Kulesha, Eugene, Staines, Dan, Bruford, Elspeth A, Wright, Mathew W, Burge, Sarah, Finn, Robert D, Kersey, Paul J, Cochrane, Guy, Bateman, Alex, Griffiths-Jones, Sam, Harrow, Jennifer, Chan, Patricia P, Lowe, Todd M, Zwieb, Christian W, Wower, Jacek, Williams, Kelly P, Hudson, Corey M, Gutell, Robin, Clark, Michael B, Dinger, Marcel, Quek, Xiu Cheng, Bujnicki, Janusz M, Chua, Nam-Hai, Liu, Jun, Wang, Huan, Skogerbø, Geir, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Cole, James R, Chai, Benli, Huang, Hsien-Da, Huang, His-Yuan, Cherry, J Michael, Hatzigeorgiou, Artemis, Pruitt, Kim D
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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The International Protein Index: An integrated database for proteomics experiments
Kersey, Paul J., Duarte, Jorge, Williams, Allyson, Karavidopoulou, Youla, Birney, Ewan, Apweiler, Rolf
Published in Proteomics (Weinheim) (01.07.2004)
Published in Proteomics (Weinheim) (01.07.2004)
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Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens
Pedro, Helder, Yates, Andrew D, Kersey, Paul J, De Silva, Nishadi H
Published in Frontiers in microbiology (07.11.2019)
Published in Frontiers in microbiology (07.11.2019)
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Data management challenges for artificial intelligence in plant and agricultural research [version 2; peer review: 2 approved]
Williamson, Hugh F., Brettschneider, Julia, Caccamo, Mario, Davey, Robert P., Goble, Carole, Kersey, Paul J., May, Sean, Morris, Richard J., Ostler, Richard, Pridmore, Tony, Rawlings, Chris, Studholme, David, Tsaftaris, Sotirios A., Leonelli, Sabina
Published in F1000 research (2023)
Published in F1000 research (2023)
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Gramene 2013: comparative plant genomics resources
Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D’Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Conservation Policy: Helping or hindering science to unlock properties of plants and fungi
Williams, China, Walsh, Alexandra, Vaglica, Valentina, Sirakaya, Aysegül, Silva, Manuela, Dalle, Gemedo, Winterton, Deborah, Annecke, Wendy, Smith, Paul, Kersey, Paul J., Way, Michael, Antonelli, Alexandre, Cowell, Carly
Published in Plants, people, planet (01.09.2020)
Published in Plants, people, planet (01.09.2020)
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PomBase 2015: updates to the fission yeast database
McDowall, Mark D., Harris, Midori A., Lock, Antonia, Rutherford, Kim, Staines, Daniel M., Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G., Wood, Valerie
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Selecting for useful properties of plants and fungi – Novel approaches, opportunities, and challenges
Kersey, Paul J., Collemare, Jerome, Cockel, Christopher, Das, Dibakar, Dulloo, Ehsan M., Kelly, Laura J., Lettice, Eoin, Malécot, Valery, Maxted, Nigel, Metheringham, Carey, Thormann, Imke, Leitch, Ilia J.
Published in Plants, people, planet (01.09.2020)
Published in Plants, people, planet (01.09.2020)
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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 1; peer review: 2 approved with reservations]
Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J, Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research (2022)
Published in F1000 research (2022)
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Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections
Cowell, Carly, Paton, Alan, Borrell, James S., Williams, China, Wilkin, Paul, Antonelli, Alexandre, Baker, William J., Buggs, Richard, Fay, Michael F., Gargiulo, Roberta, Grace, Olwen M., Kuhnhäuser, Benedikt G., Woudstra, Yannick, Kersey, Paul J.
Published in Plants, people, planet (01.01.2022)
Published in Plants, people, planet (01.01.2022)
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Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species
Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
Baker, William J, Bailey, Paul, Barber, Vanessa, Barker, Abigail, Bellot, Sidonie, Bishop, David, Botigué, Laura R, Brewer, Grace, Carruthers, Tom, Clarkson, James J, Cook, Jeffrey, Cowan, Robyn S, Dodsworth, Steven, Epitawalage, Niroshini, Françoso, Elaine, Gallego, Berta, Johnson, Matthew G, Kim, Jan T, Leempoel, Kevin, Maurin, Olivier, Mcginnie, Catherine, Pokorny, Lisa, Roy, Shyamali, Stone, Malcolm, Toledo, Eduardo, Wickett, Norman J, Zuntini, Alexandre R, Eiserhardt, Wolf L, Kersey, Paul J, Leitch, Ilia J, Forest, Félix
Published in Systematic biology (10.02.2022)
Published in Systematic biology (10.02.2022)
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Green plant genomes: What we know in an era of rapidly expanding opportunities
Kress, W John, Soltis, Douglas E, Kersey, Paul J, Wegrzyn, Jill L, Leebens-Mack, James H, Gostel, Morgan R, Liu, Xin, Soltis, Pamela S
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
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Journal Article
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research
Tello-Ruiz, Marcela K, Naithani, Sushma, Gupta, Parul, Olson, Andrew, Wei, Sharon, Preece, Justin, Jiao, Yinping, Wang, Bo, Chougule, Kapeel, Garg, Priyanka, Elser, Justin, Kumari, Sunita, Kumar, Vivek, Contreras-Moreira, Bruno, Naamati, Guy, George, Nancy, Cook, Justin, Bolser, Daniel, D’Eustachio, Peter, Stein, Lincoln D, Gupta, Amit, Xu, Weijia, Regala, Jennifer, Papatheodorou, Irene, Kersey, Paul J, Flicek, Paul, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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