Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy
Kendig, Katherine I, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Heldenbrand, Jacob R, Hernaez, Mikel, Hudson, Matthew E, Kalmbach, Michael T, Klee, Eric W, Mattson, Nathan R, Ross, Christian A, Taschuk, Morgan, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in Frontiers in genetics (20.08.2019)
Published in Frontiers in genetics (20.08.2019)
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Journal Article
Recommendations for performance optimizations when using GATK3.8 and GATK4
Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in BMC bioinformatics (08.11.2019)
Published in BMC bioinformatics (08.11.2019)
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Journal Article
Design considerations for workflow management systems use in production genomics research and the clinic
Ahmed, Azza E., Allen, Joshua M., Bhat, Tajesvi, Burra, Prakruthi, Fliege, Christina E., Hart, Steven N., Heldenbrand, Jacob R., Hudson, Matthew E., Istanto, Dave Deandre, Kalmbach, Michael T., Kapraun, Gregory D., Kendig, Katherine I., Kendzior, Matthew Charles, Klee, Eric W., Mattson, Nate, Ross, Christian A., Sharif, Sami M., Venkatakrishnan, Ramshankar, Fadlelmola, Faisal M., Mainzer, Liudmila S.
Published in Scientific reports (04.11.2021)
Published in Scientific reports (04.11.2021)
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Journal Article
Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4
Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in BMC bioinformatics (17.12.2019)
Published in BMC bioinformatics (17.12.2019)
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Journal Article
Managing genomic variant calling workflows with Swift/T
Ahmed, Azza E, Heldenbrand, Jacob, Asmann, Yan, Fadlelmola, Faisal M, Katz, Daniel S, Kendig, Katherine, Kendzior, Matthew C, Li, Tiffany, Ren, Yingxue, Rodriguez, Elliott, Weber, Matthew R, Wozniak, Justin M, Zermeno, Jennie, Mainzer, Liudmila S
Published in PloS one (09.07.2019)
Published in PloS one (09.07.2019)
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Journal Article
Design considerations for workflow management systems use in production genomics research and the clinic
Ahmed, Azza E, Allen, Joshua, Bhat, Tajesvi, Burra, Prakruthi, Fliege, Christina E, Hart, Steven N, Heldenbrand, Jacob R, Hudson, Matthew E, Istanto, Dave Deandre, Kalmbach, Michael T, Kapraun, Gregory D, Kendig, Katherine I, Kendzior, Matthew Charles, Klee, Eric W, Mattson, Nate, Ross, Christian A, Sharif, Sami M, Venkatakrishnan, Ramshankar, Fadlelmola, Faisal M, Mainzer, Liudmila Sergeevna
Published in bioRxiv (18.07.2021)
Published in bioRxiv (18.07.2021)
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Paper
Managing genomic variant calling workflows with Swift/T
Ahmed, Azza, Heldenbrand, Jacob, Asmann, Yan, Fadlelmola, Faisal, Katz, Daniel, Kendig, Katherine, Kendzior, Matthew, Li, Tiffany, Ren, Yingxue, Rodriguez, Elliott, Weber, Matthew, Zermeno, Jennie, Wozniak, Justin, Mainzer, Liudmila Sergeevna
Published in bioRxiv (18.01.2019)
Published in bioRxiv (18.01.2019)
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Paper
Computational performance and accuracy of Sentieon DNASeq variant calling workflow
Kendig, Katherine, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Heldenbrand, Jacob R, Hernaez, Mikel, Hudson, Matthew E, Kalmbach, Michael T, Klee, Eric W, Mattson, Nathan R, Ross, Christian A, Morgan Taschuk, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila Sergeevna
Published in bioRxiv (20.08.2018)
Published in bioRxiv (20.08.2018)
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Paper