Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS
Batra, Richa, Whalen, William, Alvarez-Mulett, Sergio, Gomez-Escobar, Luis G, Hoffman, Katherine L, Simmons, Will, Harrington, John, Chetnik, Kelsey, Buyukozkan, Mustafa, Benedetti, Elisa, Choi, Mary E, Suhre, Karsten, Schenck, Edward, Choi, Augustine M K, Schmidt, Frank, Cho, Soo Jung, Krumsiek, Jan
Published in PLoS pathogens (01.09.2022)
Published in PLoS pathogens (01.09.2022)
Get full text
Journal Article
Identification of rare de novo epigenetic variations in congenital disorders
Barbosa, Mafalda, Joshi, Ricky S., Garg, Paras, Martin-Trujillo, Alejandro, Patel, Nihir, Jadhav, Bharati, Watson, Corey T., Gibson, William, Chetnik, Kelsey, Tessereau, Chloe, Mei, Hui, De Rubeis, Silvia, Reichert, Jennifer, Lopes, Fatima, Vissers, Lisenka E. L. M., Kleefstra, Tjitske, Grice, Dorothy E., Edelmann, Lisa, Soares, Gabriela, Maciel, Patricia, Brunner, Han G., Buxbaum, Joseph D., Gelb, Bruce D., Sharp, Andrew J.
Published in Nature communications (25.05.2018)
Published in Nature communications (25.05.2018)
Get full text
Journal Article
Plasma metabolomics profiling of 580 patients from an Early Detection Research Network prostate cancer cohort
Benedetti, Elisa, Chetnik, Kelsey, Flynn, Thomas, Barbieri, Christopher E., Scherr, Douglas S., Loda, Massimo, Krumsiek, Jan
Published in Scientific data (25.11.2023)
Published in Scientific data (25.11.2023)
Get full text
Journal Article
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS
Batra, Richa, Uni, Rie, Akchurin, Oleh M, Alvarez-Mulett, Sergio, Gómez-Escobar, Luis G, Patino, Edwin, Hoffman, Katherine L, Simmons, Will, Whalen, William, Chetnik, Kelsey, Buyukozkan, Mustafa, Benedetti, Elisa, Suhre, Karsten, Schenck, Edward, Cho, Soo Jung, Choi, Augustine M K, Schmidt, Frank, Choi, Mary E, Krumsiek, Jan
Published in Molecular medicine (Cambridge, Mass.) (26.01.2023)
Published in Molecular medicine (Cambridge, Mass.) (26.01.2023)
Get full text
Journal Article
AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction
Schweickart, Annalise, Chetnik, Kelsey, Batra, Richa, Kaddurah-Daouk, Rima, Suhre, Karsten, Halama, Anna, Krumsiek, Jan
Published in Communications biology (06.09.2024)
Published in Communications biology (06.09.2024)
Get full text
Journal Article
Integrative metabolomic and proteomic signatures define clinical outcomes in severe COVID-19
Buyukozkan, Mustafa, Alvarez-Mulett, Sergio, Racanelli, Alexandra C., Schmidt, Frank, Batra, Richa, Hoffman, Katherine L., Sarwath, Hina, Engelke, Rudolf, Gomez-Escobar, Luis, Simmons, Will, Benedetti, Elisa, Chetnik, Kelsey, Zhang, Guoan, Schenck, Edward, Suhre, Karsten, Choi, Justin J., Zhao, Zhen, Racine-Brzostek, Sabrina, Yang, He S., Choi, Mary E., Choi, Augustine M.K., Cho, Soo Jung, Krumsiek, Jan
Published in iScience (15.07.2022)
Published in iScience (15.07.2022)
Get full text
Journal Article
Web Resource
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS
Batra, Richa, Whalen, William, Alvarez-Mulett, Sergio, Gómez-Escobar, Luis G, Hoffman, Katherine L, Simmons, Will, Harrington, John, Chetnik, Kelsey, Buyukozkan, Mustafa, Benedetti, Elisa, Choi, Mary E, Suhre, Karsten, Schenck, Edward, Choi, Augustine M K, Schmidt, Frank, Cho, Soo Jung, Krumsiek, Jan
Published in medRxiv : the preprint server for health sciences (13.08.2022)
Published in medRxiv : the preprint server for health sciences (13.08.2022)
Get more information
Journal Article
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines
Chetnik, Kelsey, Benedetti, Elisa, Gomari, Daniel P, Schweickart, Annalise, Batra, Richa, Buyukozkan, Mustafa, Wang, Zeyu, Arnold, Matthias, Zierer, Jonas, Suhre, Karsten, Krumsiek, Jan
Published in Bioinformatics (27.01.2022)
Published in Bioinformatics (27.01.2022)
Get full text
Journal Article
Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome
Price, David R, Benedetti, Elisa, Hoffman, Katherine L, Gomez-Escobar, Luis, Alvarez-Mulett, Sergio, Capili, Allyson, Sarwath, Hina, Parkhurst, Christopher N, Lafond, Elyse, Weidman, Karissa, Ravishankar, Arjun, Cheong, Jin Gyu, Batra, Richa, Büyüközkan, Mustafa, Chetnik, Kelsey, Easthausen, Imaani, Schenck, Edward J, Racanelli, Alexandra C, Outtz Reed, Hasina, Laurence, Jeffrey, Josefowicz, Steven Z, Lief, Lindsay, Choi, Mary E, Schmidt, Frank, Borczuk, Alain C, Choi, Augustine M K, Krumsiek, Jan, Rafii, Shahin
Published in The American journal of pathology (01.07.2022)
Published in The American journal of pathology (01.07.2022)
Get full text
Journal Article
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS
Richa Batra, William Whalen, Sergio Alvarez-Mulett, Luis G Gomez-Escobar, Katherine L Hoffman, Will Simmons, John Harrington, Kelsey Chetnik, Mustafa Buyukozkan, Elisa Benedetti, Mary E Choi, Karsten Suhre, Edward Schenck, Augustine M K Choi, Frank Schmidt, Soo Jung Cho, Jan Krumsiek
Published in PLoS pathogens (01.09.2022)
Published in PLoS pathogens (01.09.2022)
Get full text
Journal Article
maplet: An extensible R toolbox for modular and reproducible omics pipelines
Chetnik, Kelsey, Benedetti, Elisa, Gomari, Daniel P, Schweickart, Annalise, Batra, Richa, Buyukozkan, Mustafa, Wang, Zeyu, Arnold, Matthias, Zierer, Jonas, Suhre, Karsten, Krumsiek, Jan
Year of Publication 06.05.2021
Year of Publication 06.05.2021
Get full text
Journal Article
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS
Batra, Richa, Uni, Rie, Akchurin, Oleh M, Alvarez-Mulett, Sergio, Gómez-Escobar, Luis G, Patino, Edwin, Hoffman, Katherine L, Simmons, Will, Chetnik, Kelsey, Buyukozkan, Mustafa, Benedetti, Elisa, Suhre, Karsten, Schenck, Edward, Cho, Soo Jung, Choi, Augustine M K, Schmidt, Frank, Choi, Mary E, Krumsiek, Jan
Published in medRxiv : the preprint server for health sciences (10.08.2022)
Published in medRxiv : the preprint server for health sciences (10.08.2022)
Get more information
Journal Article
maplet: An extensible R toolbox for modular and reproducible omics pipelines
Kelsey Chetnik, Benedetti, Elisa, Gomari, Daniel P, Schweickart, Annalise, Batra, Richa, Buyukozkan, Mustafa, Wang, Zeyu, Arnold, Matthias, Zierer, Jonas, Suhre, Karsten, Krumsiek, Jan
Published in arXiv.org (06.05.2021)
Get full text
Published in arXiv.org (06.05.2021)
Paper
Identification of rare de novo epigenetic variations in congenital disorders
Barbosa, Mafalda, Joshi, Ricky S, Garg, Paras, Martin-Trujillo, Alejandro, Patel, Nihir, Jadhav, Bharati, Watson, Corey T, Gibson, William, Kelsey Chetnik, Tessereau, Chloe, Hui, Mei, De Rubeis, Silvia, Reichert, Jennifer, Lopes, Fatima, Vissers, Lisenka, Kleefstra, Tjitske, Grice, Dorothy E, Edelmann, Lisa, Soares, Gabriela, Maciel, Patricia, Brunner, Han G, Buxbaum, Joseph D, Gelb, Bruce D, Sharp, Andrew
Published in bioRxiv (19.01.2018)
Published in bioRxiv (19.01.2018)
Get full text
Paper