CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities
Han, Kyuho, Pierce, Sarah E, Li, Amy, Spees, Kaitlyn, Anderson, Gray R, Seoane, Jose A, Lo, Yuan-Hung, Dubreuil, Michael, Olivas, Micah, Kamber, Roarke A, Wainberg, Michael, Kostyrko, Kaja, Kelly, Marcus R, Yousefi, Maryam, Simpkins, Scott W, Yao, David, Lee, Keonil, Kuo, Calvin J, Jackson, Peter K, Sweet-Cordero, Alejandro, Kundaje, Anshul, Gentles, Andrew J, Curtis, Christina, Winslow, Monte M, Bassik, Michael C
Published in Nature (London) (01.04.2020)
Published in Nature (London) (01.04.2020)
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The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery
Toriyama, Michinori, Lee, Chanjae, Taylor, S Paige, Duran, Ivan, Cohn, Daniel H, Bruel, Ange-Line, Tabler, Jacqueline M, Drew, Kevin, Kelly, Marcus R, Kim, Sukyoung, Park, Tae Joo, Braun, Daniela A, Pierquin, Ghislaine, Biver, Armand, Wagner, Kerstin, Malfroot, Anne, Panigrahi, Inusha, Franco, Brunella, Al-Lami, Hadeel Adel, Yeung, Yvonne, Choi, Yeon Ja, Duffourd, Yannis, Faivre, Laurence, Rivière, Jean-Baptiste, Chen, Jiang, Liu, Karen J, Marcotte, Edward M, Hildebrandt, Friedhelm, Thauvin-Robinet, Christel, Krakow, Deborah, Jackson, Peter K, Wallingford, John B
Published in Nature genetics (01.06.2016)
Published in Nature genetics (01.06.2016)
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Comparative Proteomics Reveals Strain-Specific β-TrCP Degradation via Rotavirus NSP1 Hijacking a Host Cullin-3-Rbx1 Complex
Ding, Siyuan, Mooney, Nancie, Li, Bin, Kelly, Marcus R, Feng, Ningguo, Loktev, Alexander V, Sen, Adrish, Patton, John T, Jackson, Peter K, Greenberg, Harry B
Published in PLoS pathogens (01.10.2016)
Published in PLoS pathogens (01.10.2016)
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UHRF1 is a mediator of KRAS driven oncogenesis in lung adenocarcinoma
Kostyrko, Kaja, Román, Marta, Lee, Alex G, Simpson, David R, Dinh, Phuong T, Leung, Stanley G, Marini, Kieren D, Kelly, Marcus R, Broyde, Joshua, Califano, Andrea, Jackson, Peter K, Sweet-Cordero, E Alejandro
Published in Nature communications (05.07.2023)
Published in Nature communications (05.07.2023)
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Drebrin restricts rotavirus entry by inhibiting dynamin-mediated endocytosis
Li, Bin, Ding, Siyuan, Feng, Ningguo, Mooney, Nancie, Ooi, Yaw Shin, Ren, Lili, Diep, Jonathan, Kelly, Marcus R., Yasukawa, Linda L., Patton, John T., Yamazaki, Hiroyuki, Shirao, Tomoaki, Jackson, Peter K., Greenberg, Harry B.
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2017)
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A multi-scale map of cell structure fusing protein images and interactions
Qin, Yue, Huttlin, Edward L, Winsnes, Casper F, Gosztyla, Maya L, Wacheul, Ludivine, Kelly, Marcus R, Blue, Steven M, Zheng, Fan, Chen, Michael, Schaffer, Leah V, Licon, Katherine, Bäckström, Anna, Vaites, Laura Pontano, Lee, John J, Ouyang, Wei, Liu, Sophie N, Zhang, Tian, Silva, Erica, Park, Jisoo, Pitea, Adriana, Kreisberg, Jason F, Gygi, Steven P, Ma, Jianzhu, Harper, J Wade, Yeo, Gene W, Lafontaine, Denis L J, Lundberg, Emma, Ideker, Trey
Published in Nature (London) (16.12.2021)
Published in Nature (London) (16.12.2021)
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Combined Proteomic and Genetic Interaction Mapping Reveals New RAS Effector Pathways and Susceptibilities
Kelly, Marcus R, Kostyrko, Kaja, Han, Kyuho, Mooney, Nancie A, Jeng, Edwin E, Spees, Kaitlyn, Dinh, Phuong T, Abbott, Keene L, Gwinn, Dana M, Sweet-Cordero, E Alejandro, Bassik, Michael C, Jackson, Peter K
Published in Cancer discovery (01.12.2020)
Published in Cancer discovery (01.12.2020)
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Interpretation of cancer mutations using a multiscale map of protein systems
Zheng, Fan, Kelly, Marcus R, Ramms, Dana J, Heintschel, Marissa L, Tao, Kai, Tutuncuoglu, Beril, Lee, John J, Ono, Keiichiro, Foussard, Helene, Chen, Michael, Herrington, Kari A, Silva, Erica, Liu, Sophie N, Chen, Jing, Churas, Christopher, Wilson, Nicholas, Kratz, Anton, Pillich, Rudolf T, Patel, Devin N, Park, Jisoo, Kuenzi, Brent, Yu, Michael K, Licon, Katherine, Pratt, Dexter, Kreisberg, Jason F, Kim, Minkyu, Swaney, Danielle L, Nan, Xiaolin, Fraley, Stephanie I, Gutkind, J Silvio, Krogan, Nevan J, Ideker, Trey
Published in Science (American Association for the Advancement of Science) (01.10.2021)
Published in Science (American Association for the Advancement of Science) (01.10.2021)
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A multi-scale map of protein assemblies in the DNA damage response
Kratz, Anton, Kim, Minkyu, Kelly, Marcus R., Zheng, Fan, Koczor, Christopher A., Li, Jianfeng, Ono, Keiichiro, Qin, Yue, Churas, Christopher, Chen, Jing, Pillich, Rudolf T., Park, Jisoo, Modak, Maya, Collier, Rachel, Licon, Kate, Pratt, Dexter, Sobol, Robert W., Krogan, Nevan J., Ideker, Trey
Published in Cell systems (21.06.2023)
Published in Cell systems (21.06.2023)
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A deep learning model of tumor cell architecture elucidates response and resistance to CDK4/6 inhibitors
Park, Sungjoon, Silva, Erica, Singhal, Akshat, Kelly, Marcus R, Licon, Kate, Panagiotou, Isabella, Fogg, Catalina, Fong, Samson, Lee, John J Y, Zhao, Xiaoyu, Bachelder, Robin, Parker, Barbara A, Yeung, Kay T, Ideker, Trey
Published in Nature cancer (01.07.2024)
Published in Nature cancer (01.07.2024)
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Corrigendum: The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery
Toriyama, Michinori, Lee, Chanjae, Taylor, S Paige, Duran, Ivan, Cohn, Daniel H, Bruel, Ange-Line, Tabler, Jacqueline M, Drew, Kevin, Kelly, Marcus R, Kim, Sukyoung, Park, Tae Joo, Braun, Daniela A, Pierquin, Ghislaine, Biver, Armand, Wagner, Kerstin, Malfroot, Anne, Panigrahi, Inusha, Franco, Brunella, Al-Lami, Hadeel Adel, Yeung, Yvonne, Choi, Yeon Ja, Duffourd, Yannis, Faivre, Laurence, Rivière, Jean-Baptiste, Chen, Jiang, Liu, Karen J, Marcotte, Edward M, Hildebrandt, Friedhelm, Thauvin-Robinet, Christel, Krakow, Deborah, Jackson, Peter K, Wallingford, John B
Published in Nature genetics (01.08.2016)
Published in Nature genetics (01.08.2016)
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Erratum: Corrigendum: The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery
Toriyama, Michinori, Lee, Chanjae, Taylor, S Paige, Duran, Ivan, Cohn, Daniel H, Bruel, Ange-Line, Tabler, Jacqueline M, Drew, Kevin, Kelly, Marcus R, Kim, Sukyoung, Park, Tae Joo, Braun, Daniela A, Pierquin, Ghislaine, Biver, Armand, Wagner, Kerstin, Malfroot, Anne, Panigrahi, Inusha, Franco, Brunella, Al-lami, Hadeel Adel, Yeung, Yvonne, Choi, Yeon Ja, Duffourd, Yannis, Faivre, Laurence, Rivière, Jean-Baptiste, Chen, Jiang, Liu, Karen J, Marcotte, Edward M, Hildebrandt, Friedhelm, Thauvin-Robinet, Christel, Krakow, Deborah, Jackson, Peter K, Wallingford, John B
Published in Nature genetics (27.07.2016)
Published in Nature genetics (27.07.2016)
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Abstract 959: Proteomic and genetic interaction mapping of the Ras pathway reveals new effectors and vulnerabilities
Kelly, Marcus R., Han, Kyuho, Kostyrko, Kaja, Jeng, Edwin E., Mooney, Nancie, Sweet-Cordero, Alejandro, Bassik, Michael, Jackson, Peter K.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Abstract PR12: A combined protein-protein interaction and genetic interaction map defines new and critical Kras effectors in non-small cell lung cancer
Kelly, Marcus R., Han, Kyuho, Mooney, Nancie, Jeng, Edwin, Kostyrko, Kaja, Sweet-Cordero, Alejandro, Bassik, Michael, Jackson, Peter K.
Published in Clinical cancer research (01.09.2018)
Published in Clinical cancer research (01.09.2018)
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Abstract 4362: Identification of novel combinatorial synthetic lethal vulnerabilities in KRAS-driven lung cancer
Kostyrko, Kaja, Kelly, Marcus R., Han, Kyuho, Jeng, Edwin E., Morgens, David W., Bassik, Michael C., Jackson, Peter K., Sweet-Cordero, Alejandro
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Interpretation of cancer mutations using a multi-scale map of protein systems
Zheng, Fan, Kelly, Marcus R., Ramms, Dana J., Heintschel, Marissa L., Tao, Kai, Tutuncuoglu, Beril, Lee, John J., Ono, Keiichiro, Foussard, Helene, Chen, Michael, Herrington, Kari A., Silva, Erica, Liu, Sophie, Chen, Jing, Churas, Christopher, Wilson, Nicholas, Kratz, Anton, Pillich, Rudolf T., Patel, Devin N., Park, Jisoo, Kuenzi, Brent, Yu, Michael K., Licon, Katherine, Pratt, Dexter, Kreisberg, Jason F., Kim, Minkyu, Swaney, Danielle L., Nan, Xiaolin, Fraley, Stephanie I., Gutkind, J. Silvio, Krogan, Nevan J., Ideker, Trey
Published in Science (American Association for the Advancement of Science) (01.10.2021)
Published in Science (American Association for the Advancement of Science) (01.10.2021)
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Abstract PR03: Linking AP/MS-driven protein-protein interaction networks and combination CRISPR/sgRNA screens defines new Kras effectors and target candidates for non-small cell lung cancer
Kelly, Marcus R., Kyuho, Han, Jeng, Edwin E., Morgans, David, Kostyrko, Kaja, Simpson, David, Gwinn, Dana, Sweet-Cordero, Alejandro, Bassik, Michael C., Jackson, Peter K.
Published in Molecular cancer therapeutics (01.10.2017)
Published in Molecular cancer therapeutics (01.10.2017)
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Comparative Proteomics Reveals Strain-Specific [beta]-TrCP Degradation via Rotavirus NSP1 Hijacking a Host Cullin-3-Rbx1 Complex
Ding, Siyuan, Mooney, Nancie, Li, Bin, Kelly, Marcus R, Feng, Ningguo, Loktev, Alexander V, Sen, Adrish, Patton, John T, Jackson, Peter K, Greenberg, Harry B
Published in PLoS pathogens (05.10.2016)
Published in PLoS pathogens (05.10.2016)
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Journal Article
Comparative Proteomics Reveals Strain-Specific square -TrCP Degradation via Rotavirus NSP1 Hijacking a Host Cullin-3-Rbx1 Complex
Ding, Siyuan, Mooney, Nancie, Li, Bin, Kelly, Marcus R, Feng, Ningguo, Loktev, Alexander V, Sen, Adrish, Patton, John T, Jackson, Peter K, Greenberg, Harry B
Published in PLoS pathogens (01.10.2016)
Published in PLoS pathogens (01.10.2016)
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