A centralized resource for bacterial–fungal interactions research
Robinson, Aaron, Babinski, Michal, Xu, Yan, Kelliher, Julia, Longley, Reid, Chain, Patrick
Published in Fungal biology (01.05.2023)
Published in Fungal biology (01.05.2023)
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Journal Article
Fabricated devices for performing bacterial-fungal interaction experiments across scales
Kelliher, Julia M, Johnson, Leah Y D, Robinson, Aaron J, Longley, Reid, Hanson, Buck T, Cailleau, Guillaume, Bindschedler, Saskia, Junier, Pilar, Chain, Patrick S G
Published in Frontiers in microbiology (07.08.2024)
Published in Frontiers in microbiology (07.08.2024)
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Journal Article
Advances and Challenges in Fluorescence in situ Hybridization for Visualizing Fungal Endobacteria
Morales, Demosthenes P., Robinson, Aaron J., Pawlowski, Andrew C., Ark, Caitlyn, Kelliher, Julia M., Junier, Pilar, Werner, James H., Chain, Patrick S. G.
Published in Frontiers in microbiology (26.05.2022)
Published in Frontiers in microbiology (26.05.2022)
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Journal Article
The effect of the demyelinating agent cuprizone on binge-like eating of sweetened palatable food in female and male C57BL/6 substrains
Babbs, Richard K., Beierle, Jacob A., Yao, Emily J., Kelliher, Julia C., Medeiros, Arthurine R., Anandakumar, Jeya, Shah, Anyaa A., Chen, Melanie M., Johnson, William E., Bryant, Camron D.
Published in Appetite (01.07.2020)
Published in Appetite (01.07.2020)
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Journal Article
Genetic differences in the behavioral organization of binge eating, conditioned food reward, and compulsive-like eating in C57BL/6J and DBA/2J strains
Babbs, Richard K., Kelliher, Julia C., Scotellaro, Julia L., Luttik, Kimberly P., Mulligan, Megan K., Bryant, Camron D.
Published in Physiology & behavior (01.12.2018)
Published in Physiology & behavior (01.12.2018)
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Journal Article
Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi
Junier, Pilar, Cailleau, Guillaume, Palmieri, Ilona, Vallotton, Celine, Trautschold, Olivia C, Junier, Thomas, Paul, Christophe, Bregnard, Danae, Palmieri, Fabio, Estoppey, Aislinn, Buffi, Matteo, Lohberger, Andrea, Robinson, Aaron, Kelliher, Julia M, Davenport, Karen, House, Geoffrey L, Morales, Demosthenes, Gallegos-Graves, La Verne, Dichosa, Armand E K, Lupini, Simone, Nguyen, Hang N, Young, Jamey D, Rodrigues, Debora F, Parra-Vasquez, A Nicholas G, Bindschedler, Saskia, Chain, Patrick S G
Published in FEMS microbiology ecology (01.02.2021)
Published in FEMS microbiology ecology (01.02.2021)
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Journal Article
C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception
Bryant, Camron D, Bagdas, Deniz, Goldberg, Lisa R, Khalefa, Tala, Reed, Eric R, Kirkpatrick, Stacey L, Kelliher, Julia C, Chen, Melanie M, Johnson, William E, Mulligan, Megan K, Imad Damaj, M
Published in Molecular pain (01.01.2019)
Published in Molecular pain (01.01.2019)
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Journal Article
The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research
Kelliher, Julia M., Robinson, Aaron J., Longley, Reid, Johnson, Leah Y. D., Hanson, Buck T., Morales, Demosthenes P., Cailleau, Guillaume, Junier, Pilar, Bonito, Gregory, Chain, Patrick S. G.
Published in Microbiome (26.08.2023)
Published in Microbiome (26.08.2023)
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Journal Article
Systems genetic analysis of binge-like eating in a C57BL/6J x DBA/2J-F2 cross
Yao, Emily J, Babbs, Richard K, Kelliher, Julia C, Luttik, Kimberly P, Borrelli, Kristyn N, Damaj, M Imad, Mulligan, Megan K, Bryant, Camron D
Published in Genes, brain and behavior (12.05.2021)
Published in Genes, brain and behavior (12.05.2021)
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Journal Article
A quantitative trait variant in Gabra2 underlies increased methamphetamine stimulant sensitivity
Goldberg, Lisa R., Yao, Emily J., Kelliher, Julia C., Reed, Eric R., Wu Cox, Jiayi, Parks, Cory, Kirkpatrick, Stacey L., Beierle, Jacob A., Chen, Melanie M., Johnson, William E., Homanics, Gregg E., Williams, Robert W., Bryant, Camron D., Mulligan, Megan K.
Published in Genes, brain and behavior (01.11.2021)
Published in Genes, brain and behavior (01.11.2021)
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Journal Article
Cyfip1 Haploinsufficiency Increases Compulsive-Like Behavior and Modulates Palatable Food Intake in Mice: Dependence on Cyfip2 Genetic Background, Parent-of Origin, and Sex
Babbs, Richard K, Beierle, Jacob A, Ruan, Qiu T, Kelliher, Julia C, Chen, Melanie M, Feng, Ashley X, Kirkpatrick, Stacey L, Benitez, Fabiola A, Rodriguez, Fred A, Pierre, Johanne J, Anandakumar, Jeya, Kumar, Vivek, Mulligan, Megan K, Bryant, Camron D
Published in G3 : genes - genomes - genetics (01.09.2019)
Published in G3 : genes - genomes - genetics (01.09.2019)
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Journal Article
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp
Cailleau, Guillaume, Hanson, Buck T, Cravero, Melissa, Zhioua, Sami, Hilpish, Patrick, Ruiz, Celia, Robinson, Aaron J, Kelliher, Julia M, Morales, Demosthenes, Gallegos-Graves, La Verne, Bonito, Gregory, Chain, Patrick S G, Bindschedler, Saskia, Junier, Pilar
Published in Frontiers in fungal biology (13.12.2023)
Published in Frontiers in fungal biology (13.12.2023)
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Journal Article
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale
Hu, Bin, Canon, Shane, Eloe-Fadrosh, Emiley A., Anubhav, Babinski, Michal, Corilo, Yuri, Davenport, Karen, Duncan, William D., Fagnan, Kjiersten, Flynn, Mark, Foster, Brian, Hays, David, Huntemann, Marcel, Jackson, Elais K. Player, Kelliher, Julia, Li, Po-E., Lo, Chien-Chi, Mans, Douglas, McCue, Lee Ann, Mouncey, Nigel, Mungall, Christopher J., Piehowski, Paul D., Purvine, Samuel O., Smith, Montana, Varghese, Neha Jacob, Winston, Donald, Xu, Yan, Chain, Patrick S. G.
Published in Frontiers in bioinformatics (17.01.2022)
Published in Frontiers in bioinformatics (17.01.2022)
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Journal Article
Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource
Kelliher, Julia M., Xu, Yan, Flynn, Mark C., Babinski, Michal, Canon, Shane, Cavanna, Eric, Clum, Alicia, Corilo, Yuri E., Fujimoto, Grant, Giberson, Cameron, Johnson, Leah Y.D., Li, Kaitlyn J., Li, Po-E, Li, Valerie, Lo, Chien-Chi, Lynch, Wendi, Piehowski, Paul, Prime, Kaelan, Purvine, Samuel, Rodriguez, Francisca, Roux, Simon, Shakya, Migun, Smith, Montana, Sarrafan, Setareh, Cholia, Shreyas, McCue, Lee Ann, Mungall, Chris, Hu, Bin, Eloe-Fadrosh, Emiley A., Chain, Patrick S.G.
Published in Computational and structural biotechnology journal (01.12.2024)
Published in Computational and structural biotechnology journal (01.12.2024)
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Journal Article
Sex Differences in Behavioral and Brainstem Transcriptomic Neuroadaptations following Neonatal Opioid Exposure in Outbred Mice
Borrelli, Kristyn N, Yao, Emily J, Yen, William W, Phadke, Rhushikesh A, Ruan, Qiu T, Chen, Melanie M, Kelliher, Julia C, Langan, Carly R, Scotellaro, Julia L, Babbs, Richard K, Beierle, Jacob C, Logan, Ryan W, Johnson, William Evan, Wachman, Elisha M, Cruz-Martín, Alberto, Bryant, Camron D
Published in eNeuro (01.09.2021)
Published in eNeuro (01.09.2021)
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Journal Article
Cohort-based learning for microbiome research community standards
Kelliher, Julia M., Rudolph, Marisa, Vangay, Pajau, Abbas, Arwa, Borton, Mikayla A., Davenport, Emily R., Davenport, Karen W., Erazo, Natalia G., Herman, Chloe, Karstens, Lisa, Kocurek, Brandon, Lutz, Holly L., Myers, Kevin S., Ockert, Ingrid, Rodriguez, Francisca E., Santistevan, Camille, Saunders, Jaclyn K., Smith, Montana L., Vogtmann, Emily, Windsor, Amanda, Wood-Charlson, Elisha M., Woodley, Lou, Eloe-Fadrosh, Emiley A.
Published in Nature microbiology (01.05.2023)
Published in Nature microbiology (01.05.2023)
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Journal Article
Development of Anti- Yersinia pestis Human Antibodies with Features Required for Diagnostic and Therapeutic Applications
Lillo, Antonietta M, Velappan, Nileena, Kelliher, Julia M, Watts, Austin J, Merriman, Samuel P, Vuyisich, Grace, Lilley, Laura M, Coombs, Kent E, Mastren, Tara, Teshima, Munehiro, Stein, Benjamin W, Wagner, Gregory L, Iyer, Srinivas, Bradbury, Andrew R M, Harris, Jennifer Foster, Dichosa, Armand E, Kozimor, Stosh A
Published in ImmunoTargets and therapy (2020)
Published in ImmunoTargets and therapy (2020)
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Journal Article
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
Eloe-Fadrosh, Emiley A., Mungall, Christopher J., Miller, Mark Andrew, Smith, Montana, Patil, Sujay Sanjeev, Kelliher, Julia M., Johnson, Leah Y. D., Rodriguez, Francisca E., Chain, Patrick S. G., Hu, Bin, Thornton, Michael B., McCue, Lee Ann, McHardy, Alice Carolyn, Harris, Nomi L., Reddy, T. B. K., Mukherjee, Supratim, Hunter, Christopher I., Walls, Ramona, Schriml, Lynn M.
Published in Comparative Genomics (2024)
Published in Comparative Genomics (2024)
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Book Chapter
Journal Article
Measuring spatially-dependent gene expression across fungal mycelia by single molecule FISH
Morales, Demosthenes P., Robinson, Aaron, Kelliher, Julia, Chain, Patrick, Werner, James H.
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article